Factsheet for Solyc10g079260.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g066170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57280.1	Solyc07g066170.2.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021095	Potato	cytosol, nucleus, plasma membrane	78.7	94.27
Solyc04g016440.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	46.09	73.61
CDX88938	Canola	extracellular	33.91	63.41
CDY30992	Canola	plastid	43.91	57.71
KRG95172	Soybean	mitochondrion	53.04	53.04
AT3G57280.1	Thale cress	plastid	51.3	52.21
KRH66851	Soybean	plastid	52.17	52.17
CDX67684	Canola	plastid	50.87	51.77
CDY33831	Canola	plastid	50.87	51.32
Bra014634.1-P	Field mustard	extracellular	35.22	50.62
VIT_00s0252g00030.t01	Wine grape	plastid	48.7	48.91
Bra007316.1-P	Field mustard	plastid	45.22	47.93
CDY06118	Canola	plastid	45.22	47.71
CDX72054	Canola	plastid	44.78	46.4
Zm00001d021040_P001	Maize	golgi, peroxisome, plasma membrane	28.26	38.01
Solyc07g064470.2.1	Tomato	endoplasmic reticulum, extracellular	19.13	36.97
Zm00001d025663_P003	Maize	plastid	34.78	36.53
GSMUA_Achr3P04170_001	Banana	plastid	39.13	36.44
TraesCS2D01G331600.1	Wheat	mitochondrion, plastid	34.78	36.2
GSMUA_Achr9P12790_001	Banana	plastid	37.83	35.08
EES12340	Sorghum	plastid	33.48	34.68
Os04t0470300-01	Rice	plastid	33.48	34.53
TraesCS2B01G350900.1	Wheat	plastid	34.78	34.33
EER98049	Sorghum	plastid	37.39	34.13
Zm00001d036684_P001	Maize	plastid	14.35	34.02
TraesCS2A01G331300.1	Wheat	plastid	34.35	33.91
Solyc10g006310.2.1	Tomato	endoplasmic reticulum, extracellular	17.39	33.61
Zm00001d018927_P001	Maize	mitochondrion	38.7	33.58
Zm00001d037138_P001	Maize	extracellular	11.74	33.33
TraesCS7A01G219900.2	Wheat	plastid	34.78	33.2
TraesCS7B01G127500.2	Wheat	plastid	34.35	32.92
TraesCS7D01G222200.2	Wheat	plastid	34.35	32.78
Os06t0301100-01	Rice	plastid	33.48	32.49
GSMUA_Achr4P01650_001	Banana	mitochondrion	27.39	31.03
Zm00001d035128_P001	Maize	extracellular	16.52	29.46
HORVU2Hr1G081780.5	Barley	plastid	31.74	29.44
HORVU7Hr1G045420.1	Barley	cytosol, peroxisome	35.22	26.64
Zm00001d031990_P001	Maize	extracellular	15.65	25.35
Zm00001d049001_P001	Maize	mitochondrion	16.96	19.6
Zm00001d007235_P001	Maize	plasma membrane	16.96	17.18
Zm00001d045615_P001	Maize	cytosol, endoplasmic reticulum, plastid	29.13	15.26

Protein Annotations

EnsemblPlants:Solyc10g079260.1.1	EnsemblPlantsGene:Solyc10g079260.1	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF18	PFAM:PF03647	ProteinID:ABO36625.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000171BDAC	UniProt:B1N671	MapMan:5.8.3	:	:

Description

Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:B1N671]

Coordinates

chr10:+:60825827..60829608

Molecular Weight (calculated)

24763.6 Da

IEP (calculated)

9.633

GRAVY (calculated)

0.082

Length

230 amino acids

Sequence
(BLAST)

001: MSLAISQLSC FSSINRRLVQ FHSRPLQPCS TFSLKVISMS NDVHGTDESS LKSRTTLSYA TDSSQSLNGT SSNSYSAPEE YVSEKEINES VQENSSSQPK
101: KAAKIHDFCL GIPFGGFVFT GGFIGFIFSR NPATLSSGVL FGGALLALST ISMKVWREGK TSFPFILGQA VLAATLLWKN MQTFSLTGKL FPTGFFAAIS
201: AAMFCFYSYV ILSGGNPPPK KLKASTSGAY

Best Arabidopsis Sequence Match ( AT3G57280.1 )
(BLAST)

001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY

Arabidopsis Description

FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.