Factsheet for VIT_00s0252g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57280.1	VIT_19s0015g01790.t01	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g016440.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	41.48	65.97
CDX88938	Canola	extracellular	34.93	65.04
CDY30992	Canola	plastid	44.98	58.86
Bra014634.1-P	Field mustard	extracellular	37.99	54.38
CDY06118	Canola	plastid	50.22	52.75
CDX72054	Canola	plastid	50.66	52.25
PGSC0003DMT400033126	Potato	plastid	51.97	52.19
Bra007316.1-P	Field mustard	plastid	48.47	51.15
CDX67684	Canola	plastid	48.91	49.56
PGSC0003DMT400021095	Potato	cytosol, nucleus, plasma membrane	41.05	48.96
Solyc10g079260.1.1	Tomato	plastid	48.91	48.7
AT3G57280.1	Thale cress	plastid	47.6	48.23
KRG95172	Soybean	mitochondrion	47.6	47.39
CDY33831	Canola	plastid	47.16	47.37
KRH66851	Soybean	plastid	46.72	46.52
GSMUA_Achr3P04170_001	Banana	plastid	40.17	37.25
GSMUA_Achr9P12790_001	Banana	plastid	40.17	37.1
Zm00001d037138_P001	Maize	extracellular	13.1	37.04
Zm00001d036684_P001	Maize	plastid	15.28	36.08
Zm00001d025663_P003	Maize	plastid	31.88	33.33
Os04t0470300-01	Rice	plastid	32.31	33.18
TraesCS2D01G331600.1	Wheat	mitochondrion, plastid	31.88	33.03
VIT_19s0090g00200.t01	Wine grape	extracellular, golgi, vacuole	15.72	33.03
Os06t0301100-01	Rice	plastid	33.62	32.49
Zm00001d021040_P001	Maize	golgi, peroxisome, plasma membrane	24.02	32.16
TraesCS7B01G127500.2	Wheat	plastid	33.19	31.67
TraesCS7D01G222200.2	Wheat	plastid	33.19	31.54
EES12340	Sorghum	plastid	30.57	31.53
TraesCS2A01G331300.1	Wheat	plastid	31.44	30.9
TraesCS7A01G219900.2	Wheat	plastid	32.31	30.71
TraesCS2B01G350900.1	Wheat	plastid	31.0	30.47
Zm00001d035128_P001	Maize	extracellular	17.03	30.23
Zm00001d031990_P001	Maize	extracellular	17.47	28.17
HORVU2Hr1G081780.5	Barley	plastid	30.13	27.82
EER98049	Sorghum	plastid	30.13	27.38
Zm00001d018927_P001	Maize	mitochondrion	31.44	27.17
GSMUA_Achr4P01650_001	Banana	mitochondrion	22.71	25.62
HORVU7Hr1G045420.1	Barley	cytosol, peroxisome	33.62	25.33
Zm00001d049001_P001	Maize	mitochondrion	16.59	19.1
Zm00001d007235_P001	Maize	plasma membrane	17.03	17.18
Zm00001d045615_P001	Maize	cytosol, endoplasmic reticulum, plastid	25.76	13.44

Protein Annotations

Gene3D:1.20.58.1140	EntrezGene:100255501	wikigene:100255501	MapMan:5.8.3	ProteinID:CBI33378	ProteinID:CBI33378.3
UniProt:D7TSA6	EMBL:FN596242	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0007275	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009653	GO:GO:0009706	GO:GO:0009941	GO:GO:0009987	GO:GO:0010208
GO:GO:0015245	GO:GO:0015908	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0055088
GO:GO:0071668	GO:GO:1902001	EntrezGene:LOC100255501	wikigene:LOC100255501	PFAM:PF03647	PANTHER:PTHR12668
PANTHER:PTHR12668:SF18	InterPro:TMEM14	TMHMM:TMhelix	UniParc:UPI0001BE3FA9	ArrayExpress:VIT_00s0252g00030	EnsemblPlantsGene:VIT_00s0252g00030
EnsemblPlants:VIT_00s0252g00030.t01	unigene:Vvi.3707	RefSeq:XP_002284565	RefSeq:XP_002284565.2	SEG:seg	:

Description

No Description!

Coordinates

chrUn:+:17602627..17620628

Molecular Weight (calculated)

24952.3 Da

IEP (calculated)

10.252

GRAVY (calculated)

0.040

Length

229 amino acids

Sequence
(BLAST)

001: MSSTIRQLSC FSSINRYLHL QKRPVYSVAI RSKLPVVMSL EGHGTETSSS EIKATSSYAA DTSKLPIEGT AKSYQSIKND AEQMGMTEPV QEYGVTQQKR
101: TAKIHDFCFG IPYGGLVLSG SFVGFIFSKN PTALSTGVLF GGALLALSTL SLKIWRQGKS SLPFVLGQAV LSAALFWKNF QTYSLTKKLF PTGFFAIISA
201: AMLCFYSYVM ISGGNPPPKK LKATERHSS

Best Arabidopsis Sequence Match ( AT3G57280.1 )
(BLAST)

001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY

Arabidopsis Description

FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.