Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plasma membrane 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400022426 | |
| PGSC0003DMT400056956 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57280.1 | PGSC0003DMT400022426 | AT4G26455.1 | 21798944 |
| AT3G57280.1 | PGSC0003DMT400056956 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g079260.1.1 | Tomato | plastid | 94.27 | 78.7 |
| CDX88938 | Canola | extracellular | 40.62 | 63.41 |
| CDY30992 | Canola | plastid | 47.4 | 52.0 |
| Bra014634.1-P | Field mustard | extracellular | 42.19 | 50.62 |
| AT3G57280.1 | Thale cress | plastid | 56.25 | 47.79 |
| CDX67684 | Canola | plastid | 55.21 | 46.9 |
| KRG95172 | Soybean | mitochondrion | 55.73 | 46.52 |
| KRH66851 | Soybean | plastid | 55.21 | 46.09 |
| PGSC0003DMT400033126 | Potato | plastid | 54.69 | 46.05 |
| CDY33831 | Canola | plastid | 54.69 | 46.05 |
| Bra007316.1-P | Field mustard | plastid | 48.44 | 42.86 |
| CDY06118 | Canola | plastid | 48.44 | 42.66 |
| VIT_00s0252g00030.t01 | Wine grape | plastid | 48.96 | 41.05 |
| CDX72054 | Canola | plastid | 47.4 | 40.99 |
| Zm00001d021040_P001 | Maize | golgi, peroxisome, plasma membrane | 34.38 | 38.6 |
| Zm00001d036684_P001 | Maize | plastid | 18.23 | 36.08 |
| GSMUA_Achr3P04170_001 | Banana | plastid | 46.35 | 36.03 |
| Zm00001d037138_P001 | Maize | extracellular | 15.1 | 35.8 |
| Zm00001d025663_P003 | Maize | plastid | 39.58 | 34.7 |
| PGSC0003DMT400037293 | Potato | endoplasmic reticulum, extracellular | 21.35 | 34.45 |
| Os04t0470300-01 | Rice | plastid | 39.58 | 34.08 |
| TraesCS2D01G331600.1 | Wheat | mitochondrion, plastid | 39.06 | 33.94 |
| GSMUA_Achr9P12790_001 | Banana | plastid | 42.71 | 33.06 |
| EES12340 | Sorghum | plastid | 38.02 | 32.88 |
| TraesCS2B01G350900.1 | Wheat | plastid | 39.58 | 32.62 |
| EER98049 | Sorghum | plastid | 42.71 | 32.54 |
| Zm00001d018927_P001 | Maize | mitochondrion | 44.79 | 32.45 |
| TraesCS2A01G331300.1 | Wheat | plastid | 39.06 | 32.19 |
| TraesCS7B01G127500.2 | Wheat | plastid | 40.1 | 32.08 |
| TraesCS7A01G219900.2 | Wheat | plastid | 40.1 | 31.95 |
| TraesCS7D01G222200.2 | Wheat | plastid | 40.1 | 31.95 |
| Os06t0301100-01 | Rice | plastid | 38.54 | 31.22 |
| PGSC0003DMT400057207 | Potato | endoplasmic reticulum, extracellular | 14.58 | 30.11 |
| Zm00001d035128_P001 | Maize | extracellular | 19.79 | 29.46 |
| HORVU2Hr1G081780.5 | Barley | plastid | 36.46 | 28.23 |
| GSMUA_Achr4P01650_001 | Banana | mitochondrion | 29.69 | 28.08 |
| Zm00001d031990_P001 | Maize | extracellular | 18.75 | 25.35 |
| HORVU7Hr1G045420.1 | Barley | cytosol, peroxisome | 40.1 | 25.33 |
| Zm00001d049001_P001 | Maize | mitochondrion | 20.83 | 20.1 |
| Zm00001d007235_P001 | Maize | plasma membrane | 20.31 | 17.18 |
| Zm00001d045615_P001 | Maize | cytosol, endoplasmic reticulum, plastid | 33.85 | 14.81 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400021095 | EnsemblPlantsGene:PGSC0003DMG400008171 | Gene3D:1.20.58.1140 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMEM14 | PANTHER:PTHR12668 | PANTHER:PTHR12668:SF18 | PFAM:PF03647 | PGSC:PGSC0003DMG400008171 | TMHMM:TMhelix |
| UniParc:UPI000294D7B0 | UniProt:M1AEM0 | MapMan:5.8.3 | : | : | : |
Description
Transmembrane protein 14 [Source:PGSC_GENE;Acc:PGSC0003DMG400008171]
Coordinates
chr10:-:58505601..58509943
Molecular Weight (calculated)
20384.3 Da
IEP (calculated)
9.084
GRAVY (calculated)
0.027
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNDGHGTDE SSLKNRTTLS YATDSSQSLN GTASNSYSAL EENVTEKEIN ESVQENSSSQ PKKAAKIHDF CLGIPFGGLV FTGGLIGFIF SRNPATLSSG
101: VLFGGALLSL STISMKVWRE GKTSFPFILG QAVLAAALLW KNMQTFSLTG KMFPTGFFAA ISAAMFCFYS YVILSGGNPP PKKLKASTSG AY
101: VLFGGALLSL STISMKVWRE GKTSFPFILG QAVLAAALLW KNMQTFSLTG KMFPTGFFAA ISAAMFCFYS YVILSGGNPP PKKLKASTSG AY
001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY
Arabidopsis Description
FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.