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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 9
  • extracellular 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:extracellular, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:extracellular
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:plastid
 mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH56393
KRH62532

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G57280.1 KRH56393 AT4G26455.1 21798944
AT3G57280.1 KRH62532 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH66851 Soybean plastid 95.22 95.22
Solyc04g016440.2.1 Tomato endoplasmic reticulum, peroxisome, plasma membrane, plastid 41.74 66.67
CDX88938 Canola extracellular 31.74 59.35
PGSC0003DMT400021095 Potato cytosol, nucleus, plasma membrane 46.52 55.73
Solyc10g079260.1.1 Tomato plastid 53.04 53.04
CDY30992 Canola plastid 39.57 52.0
CDY06118 Canola plastid 45.65 48.17
PGSC0003DMT400033126 Potato plastid 47.39 47.81
VIT_00s0252g00030.t01 Wine grape plastid 47.39 47.6
Bra014634.1-P Field mustard extracellular 33.04 47.5
Bra007316.1-P Field mustard plastid 44.78 47.47
CDX67684 Canola plastid 45.65 46.46
CDX72054 Canola plastid 44.78 46.4
CDY33831 Canola plastid 45.65 46.05
AT3G57280.1 Thale cress plastid 43.91 44.69
TraesCS2D01G331600.1 Wheat mitochondrion, plastid 33.91 35.29
GSMUA_Achr3P04170_001 Banana plastid 37.83 35.22
Zm00001d037138_P001 Maize extracellular 12.17 34.57
Os04t0470300-01 Rice plastid 33.04 34.08
Zm00001d021040_P001 Maize golgi, peroxisome, plasma membrane 25.22 33.92
Os06t0301100-01 Rice plastid 34.78 33.76
KRH14426 Soybean endoplasmic reticulum, extracellular 17.39 33.61
GSMUA_Achr9P12790_001 Banana plastid 36.09 33.47
TraesCS2A01G331300.1 Wheat plastid 33.48 33.05
Zm00001d025663_P003 Maize plastid 31.3 32.88
TraesCS2B01G350900.1 Wheat plastid 33.04 32.62
TraesCS7A01G219900.2 Wheat plastid 33.91 32.37
TraesCS7B01G127500.2 Wheat plastid 33.48 32.08
Zm00001d036684_P001 Maize plastid 13.48 31.96
TraesCS7D01G222200.2 Wheat plastid 33.04 31.54
EES12340 Sorghum plastid 30.43 31.53
HORVU2Hr1G081780.5 Barley plastid 31.74 29.44
EER98049 Sorghum plastid 32.17 29.37
Zm00001d018927_P001 Maize mitochondrion 33.04 28.68
GSMUA_Achr4P01650_001 Banana mitochondrion 25.22 28.57
Zm00001d035128_P001 Maize extracellular 15.65 27.91
HORVU7Hr1G045420.1 Barley cytosol, peroxisome 34.78 26.32
Zm00001d031990_P001 Maize extracellular 14.78 23.94
Zm00001d049001_P001 Maize mitochondrion 15.22 17.59
Zm00001d007235_P001 Maize plasma membrane 16.09 16.3
Zm00001d045615_P001 Maize cytosol, endoplasmic reticulum, plastid 26.09 13.67
Protein Annotations
EMBL:ACUP02012088EnsemblPlants:KRG95172EnsemblPlantsGene:GLYMA_19G135000EntrezGene:100777952Gene3D:1.20.58.1140GO:GO:0005575
GO:GO:0016020GO:GO:0016021InterPro:TMEM14PANTHER:PTHR12668PANTHER:PTHR12668:SF18PFAM:PF03647
ProteinID:KRG95172ProteinID:KRG95172.1SEG:segTMHMM:TMhelixUniParc:UPI000233E8C5UniProt:I1N8W8
MapMan:5.8.3:::::
Description
hypothetical protein
Coordinates
chr19:+:39595385..39600704
Molecular Weight (calculated)
24745.1 Da
IEP (calculated)
10.384
GRAVY (calculated)
0.078
Length
230 amino acids
Sequence
(BLAST)
001: MAAATAISQL GCFSAVHRSS HLRRRSLLFP CPRSKLSVVM SLERHDTDTA GSDTKNTLSY AADVSKLHVE EKKHSYSTKD GHDTEKLGFG EATQESVHQP
101: KRTAKIHDFC LGIPFGGFVL TGGIIGFLFS RSPATLGSGV LFGGALLFLS TFSMKVWRQG KSSLPFILGQ AALAGVLIWK NFQSYSLAKK IFPTGISAII
201: SSAMLCFYLY VLISGGNPPP KKLKPSASTA
Best Arabidopsis Sequence Match ( AT3G57280.1 )
(BLAST)
001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY
Arabidopsis Description
FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.