Factsheet for TraesCS7A01G219900.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G331000.1
TraesCS2B01G351300.1
TraesCS2D01G332000.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G238200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57280.1	TraesCS2A01G331000.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS2B01G351300.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS2D01G332000.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS5A01G257000.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS5B01G256500.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS5D01G265600.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS7A01G240200.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS7B01G135800.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS7D01G238200.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G222200.2	Wheat	plastid	97.1	97.1
TraesCS7B01G127500.2	Wheat	plastid	96.27	96.67
HORVU7Hr1G045420.1	Barley	cytosol, peroxisome	92.95	73.68
Os06t0301100-01	Rice	plastid	69.71	70.89
Zm00001d021040_P001	Maize	golgi, peroxisome, plasma membrane	41.49	58.48
EER98049	Sorghum	plastid	58.09	55.56
Zm00001d018927_P001	Maize	mitochondrion	53.53	48.68
Solyc04g016440.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	29.05	48.61
TraesCS2A01G331300.1	Wheat	plastid	43.57	45.06
CDX88938	Canola	extracellular	22.82	44.72
PGSC0003DMT400021095	Potato	cytosol, nucleus, plasma membrane	31.95	40.1
CDY30992	Canola	plastid	29.05	40.0
GSMUA_Achr9P12790_001	Banana	plastid	38.17	37.1
GSMUA_Achr3P04170_001	Banana	plastid	37.76	36.84
Bra007316.1-P	Field mustard	plastid	32.78	36.41
PGSC0003DMT400033126	Potato	plastid	34.02	35.96
Bra014634.1-P	Field mustard	extracellular	23.65	35.62
CDY06118	Canola	plastid	31.95	35.32
Solyc10g079260.1.1	Tomato	plastid	33.2	34.78
CDX72054	Canola	plastid	31.54	34.23
CDY33831	Canola	plastid	32.37	34.21
CDX67684	Canola	plastid	31.95	34.07
KRG95172	Soybean	mitochondrion	32.37	33.91
KRH66851	Soybean	plastid	32.37	33.91
AT3G57280.1	Thale cress	plastid	31.54	33.63
VIT_00s0252g00030.t01	Wine grape	plastid	30.71	32.31
TraesCS7A01G190000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	15.35	31.09
GSMUA_Achr4P01650_001	Banana	mitochondrion	24.48	29.06
Zm00001d045615_P001	Maize	cytosol, endoplasmic reticulum, plastid	48.13	26.42

Protein Annotations

EnsemblPlants:TraesCS7A01G219900.2	EnsemblPlantsGene:TraesCS7A01G219900	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0016020	InterPro:TMEM14
PANTHER:PTHR12668	PANTHER:PTHR12668:SF18	PFAM:PF03647	SEG:seg	TMHMM:TMhelix	MapMan:5.8.3

Description

No Description!

Coordinates

chr7A:+:187938146..187940535

Molecular Weight (calculated)

25517.3 Da

IEP (calculated)

10.290

GRAVY (calculated)

0.341

Length

241 amino acids

Sequence
(BLAST)

001: MAATQLRGSA VPGTARRWRA PSGAILRFAP LATSRLPAAS LRRRGAFSGL SASVTRELIA LQSLTTMCMK SKCTSTPIDH ATAPEHTEDE VPEPTAVVTA
101: SEEINIDQEV APPHKSAIIH DFCLGIPFGG LLFSMGLVGF LFWRSPVSLT FGVAPGLAIL GLAVLSLKGW RSGKSSLPFI LAQAAVAAAV AWKHCQAYAT
201: TKKLLPWGFY TALSVLMICF YSYVLLAGGN PPPKKKPAAA I

Best Arabidopsis Sequence Match ( AT3G57280.1 )
(BLAST)

001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY

Arabidopsis Description

FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.