Factsheet for GSMUA_Achr9P12790_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57280.1	GSMUA_Achr10P...	AT4G26455.1	21798944
AT3G57280.1	GSMUA_Achr3P04120_001	AT4G26455.1	21798944
AT3G57280.1	GSMUA_Achr4P01630_001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P04170_001	Banana	plastid	69.76	70.04
Solyc04g016440.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	31.45	54.17
CDX88938	Canola	extracellular	24.6	49.59
CDY30992	Canola	plastid	30.24	42.86
PGSC0003DMT400021095	Potato	cytosol, nucleus, plasma membrane	33.06	42.71
GSMUA_Achr4P01650_001	Banana	mitochondrion	33.87	41.38
Zm00001d025663_P003	Maize	plastid	35.48	40.18
VIT_00s0252g00030.t01	Wine grape	plastid	37.1	40.17
TraesCS2D01G331600.1	Wheat	mitochondrion, plastid	35.48	39.82
Zm00001d037138_P001	Maize	extracellular	12.9	39.51
Bra014634.1-P	Field mustard	extracellular	25.4	39.38
EES12340	Sorghum	plastid	35.08	39.19
PGSC0003DMT400033126	Potato	plastid	35.48	38.6
TraesCS7B01G127500.2	Wheat	plastid	37.1	38.33
TraesCS7A01G219900.2	Wheat	plastid	37.1	38.17
Os04t0470300-01	Rice	plastid	34.27	38.12
Solyc10g079260.1.1	Tomato	plastid	35.08	37.83
TraesCS2A01G331300.1	Wheat	plastid	35.48	37.77
TraesCS7D01G222200.2	Wheat	plastid	36.69	37.76
TraesCS2B01G350900.1	Wheat	plastid	35.08	37.34
AT3G57280.1	Thale cress	plastid	33.87	37.17
Os06t0301100-01	Rice	plastid	35.48	37.13
CDY33831	Canola	plastid	33.87	36.84
Bra007316.1-P	Field mustard	plastid	31.85	36.41
KRG95172	Soybean	mitochondrion	33.47	36.09
KRH66851	Soybean	plastid	33.47	36.09
CDX72054	Canola	plastid	31.85	35.59
CDY06118	Canola	plastid	31.05	35.32
Zm00001d036684_P001	Maize	plastid	13.71	35.05
CDX67684	Canola	plastid	31.85	34.96
Zm00001d021040_P001	Maize	golgi, peroxisome, plasma membrane	23.39	33.92
HORVU2Hr1G081780.5	Barley	plastid	32.66	32.66
Zm00001d035128_P001	Maize	extracellular	16.94	32.56
HORVU7Hr1G045420.1	Barley	cytosol, peroxisome	38.31	31.25
EER98049	Sorghum	plastid	31.45	30.95
Zm00001d018927_P001	Maize	mitochondrion	31.85	29.81
GSMUA_Achr6P29380_001	Banana	endoplasmic reticulum, extracellular	14.11	29.41
GSMUA_Achr6P21760_001	Banana	endoplasmic reticulum, extracellular	13.31	27.73
Zm00001d031990_P001	Maize	extracellular	15.73	27.46
Zm00001d049001_P001	Maize	mitochondrion	17.34	21.61
Zm00001d007235_P001	Maize	plasma membrane	16.94	18.5
Zm00001d045615_P001	Maize	cytosol, endoplasmic reticulum, plastid	27.02	15.26

Protein Annotations

EnsemblPlants:GSMUA_Achr9P12790_001	EnsemblPlants:GSMUA_Achr9T12790_001	EnsemblPlantsGene:GSMUA_Achr9G12790_001	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF18	PFAM:PF03647	SEG:seg
TMHMM:TMhelix	UniParc:UPI000295F926	UniProt:M0TZT8	MapMan:5.8.3	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_252.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr9G12790_001]

Coordinates

chr9:+:8299624..8302859

Molecular Weight (calculated)

26889.9 Da

IEP (calculated)

10.663

GRAVY (calculated)

0.108

Length

248 amino acids

Sequence
(BLAST)

001: MAASQLYGSG LVAKRSMRSL EGRRPSLPWS RVSSSDSVDF KSMCFRVPAF RVSNISGRKL SVSMSLNGTS AGSNVDANNA IRYAEGTKPD LVYDPLKSNP
101: TEESFDGKMG MDMRIQKEGI IPTKRSAKLH DFCFGIPFGG FLFAGGLLGF IFSRNAMAMI HGGAILVLSV LSLKVWRTGR SSLPFILGQA AFSAAFLWKL
201: MQAYTLSKKL FPTGFYIFSS AAMICFYSYV LISGGNPPPK KLAAAPQS

Best Arabidopsis Sequence Match ( AT3G57280.1 )
(BLAST)

001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY

Arabidopsis Description

FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.