Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 6
- golgi 3
- plasma membrane 3
- endoplasmic reticulum 3
- vacuole 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57280.1 | CDX89333 | AT4G26455.1 | 21798944 |
| AT3G57280.1 | CDX94330 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014634.1-P | Field mustard | extracellular | 83.74 | 64.38 |
| CDY30992 | Canola | plastid | 78.86 | 55.43 |
| Solyc04g016440.2.1 | Tomato | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 59.35 | 50.69 |
| CDY06118 | Canola | plastid | 81.3 | 45.87 |
| CDX72054 | Canola | plastid | 81.3 | 45.05 |
| CDX67684 | Canola | plastid | 79.67 | 43.36 |
| CDY33831 | Canola | plastid | 79.67 | 42.98 |
| AT3G57280.1 | Thale cress | plastid | 77.24 | 42.04 |
| PGSC0003DMT400021095 | Potato | cytosol, nucleus, plasma membrane | 63.41 | 40.62 |
| Zm00001d037138_P001 | Maize | extracellular | 24.39 | 37.04 |
| VIT_00s0252g00030.t01 | Wine grape | plastid | 65.04 | 34.93 |
| Solyc10g079260.1.1 | Tomato | plastid | 63.41 | 33.91 |
| CDY65222 | Canola | endoplasmic reticulum, extracellular, vacuole | 32.52 | 33.61 |
| CDY19635 | Canola | extracellular, plasma membrane, vacuole | 31.71 | 32.77 |
| CDY71352 | Canola | endoplasmic reticulum, extracellular, vacuole | 31.71 | 32.77 |
| PGSC0003DMT400033126 | Potato | plastid | 59.35 | 32.02 |
| KRG95172 | Soybean | mitochondrion | 59.35 | 31.74 |
| KRH66851 | Soybean | plastid | 58.54 | 31.3 |
| Zm00001d036684_P001 | Maize | plastid | 24.39 | 30.93 |
| CDY69173 | Canola | plasma membrane | 30.89 | 30.89 |
| CDY25185 | Canola | extracellular, plasma membrane | 30.08 | 30.08 |
| Zm00001d035128_P001 | Maize | extracellular | 30.08 | 28.68 |
| GSMUA_Achr3P04170_001 | Banana | plastid | 52.85 | 26.32 |
| TraesCS2D01G331600.1 | Wheat | mitochondrion, plastid | 46.34 | 25.79 |
| Zm00001d025663_P003 | Maize | plastid | 45.53 | 25.57 |
| Os04t0470300-01 | Rice | plastid | 46.34 | 25.56 |
| EES12340 | Sorghum | plastid | 44.72 | 24.77 |
| Zm00001d031990_P001 | Maize | extracellular | 28.46 | 24.65 |
| GSMUA_Achr9P12790_001 | Banana | plastid | 49.59 | 24.6 |
| TraesCS2A01G331300.1 | Wheat | plastid | 46.34 | 24.46 |
| TraesCS2B01G350900.1 | Wheat | plastid | 45.53 | 24.03 |
| Zm00001d021040_P001 | Maize | golgi, peroxisome, plasma membrane | 33.33 | 23.98 |
| Os06t0301100-01 | Rice | plastid | 45.53 | 23.63 |
| TraesCS7B01G127500.2 | Wheat | plastid | 45.53 | 23.33 |
| TraesCS7D01G222200.2 | Wheat | plastid | 45.53 | 23.24 |
| TraesCS7A01G219900.2 | Wheat | plastid | 44.72 | 22.82 |
| EER98049 | Sorghum | plastid | 45.53 | 22.22 |
| Zm00001d018927_P001 | Maize | mitochondrion | 46.34 | 21.51 |
| HORVU2Hr1G081780.5 | Barley | plastid | 43.09 | 21.37 |
| HORVU7Hr1G045420.1 | Barley | cytosol, peroxisome | 45.53 | 18.42 |
| Zm00001d049001_P001 | Maize | mitochondrion | 29.27 | 18.09 |
| GSMUA_Achr4P01650_001 | Banana | mitochondrion | 28.46 | 17.24 |
| Zm00001d007235_P001 | Maize | plasma membrane | 30.89 | 16.74 |
| CDX82243 | Canola | plasma membrane | 33.33 | 14.91 |
| Zm00001d045615_P001 | Maize | cytosol, endoplasmic reticulum, plastid | 33.33 | 9.34 |
Protein Annotations
| EnsemblPlants:CDX88938 | EnsemblPlantsGene:GSBRNA2T00149036001 | GO:A0A078DP11 | GO:GO:0005575 | GO:GO:0016020 | InterPro:TMEM14 |
| PANTHER:PTHR12668 | PANTHER:PTHR12668:SF18 | ProteinID:CDX88938 | ProteinID:CDX88938.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EE8CA7 | MapMan:5.8.3 | : | : | : | : |
Description
BnaA04g02480D
Coordinates
chrLK031857:+:9066..9719
Molecular Weight (calculated)
13018.4 Da
IEP (calculated)
10.182
GRAVY (calculated)
0.739
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MRECLLSGGL VMSGGLLGFA FSRNLTSLST GVLYGGALLA LSTLSMKIWR QGKSSFPYIL GQAVLSAVTK KLFPAGLLAV ILVTFFLCLF HCSAAMLCFY
101: SYVVLSGGNP PPKKLKPSAS PSY
101: SYVVLSGGNP PPKKLKPSAS PSY
001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY
Arabidopsis Description
FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.