Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra026434.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57280.1 | Bra026434.1-P | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88938 | Canola | extracellular | 64.38 | 83.74 |
| Solyc04g016440.2.1 | Tomato | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 48.12 | 53.47 |
| Bra007316.1-P | Field mustard | plastid | 68.12 | 50.23 |
| AT3G57280.1 | Thale cress | plastid | 65.0 | 46.02 |
| PGSC0003DMT400021095 | Potato | cytosol, nucleus, plasma membrane | 50.62 | 42.19 |
| VIT_00s0252g00030.t01 | Wine grape | plastid | 54.38 | 37.99 |
| Zm00001d037138_P001 | Maize | extracellular | 18.12 | 35.8 |
| Solyc10g079260.1.1 | Tomato | plastid | 50.62 | 35.22 |
| Zm00001d036684_P001 | Maize | plastid | 20.62 | 34.02 |
| PGSC0003DMT400033126 | Potato | plastid | 48.12 | 33.77 |
| KRG95172 | Soybean | mitochondrion | 47.5 | 33.04 |
| KRH66851 | Soybean | plastid | 46.88 | 32.61 |
| Zm00001d035128_P001 | Maize | extracellular | 25.62 | 31.78 |
| Bra018873.1-P | Field mustard | extracellular, plasma membrane | 22.5 | 29.27 |
| GSMUA_Achr3P04170_001 | Banana | plastid | 42.5 | 27.53 |
| Zm00001d031990_P001 | Maize | extracellular | 24.38 | 27.46 |
| TraesCS2D01G331600.1 | Wheat | mitochondrion, plastid | 36.88 | 26.7 |
| Zm00001d025663_P003 | Maize | plastid | 35.62 | 26.03 |
| Os04t0470300-01 | Rice | plastid | 36.25 | 26.01 |
| GSMUA_Achr9P12790_001 | Banana | plastid | 39.38 | 25.4 |
| TraesCS2A01G331300.1 | Wheat | plastid | 36.88 | 25.32 |
| EES12340 | Sorghum | plastid | 35.0 | 25.23 |
| Zm00001d021040_P001 | Maize | golgi, peroxisome, plasma membrane | 26.88 | 25.15 |
| Os06t0301100-01 | Rice | plastid | 36.88 | 24.89 |
| TraesCS2B01G350900.1 | Wheat | plastid | 36.25 | 24.89 |
| TraesCS7B01G127500.2 | Wheat | plastid | 36.25 | 24.17 |
| TraesCS7D01G222200.2 | Wheat | plastid | 36.25 | 24.07 |
| TraesCS7A01G219900.2 | Wheat | plastid | 35.62 | 23.65 |
| HORVU2Hr1G081780.5 | Barley | plastid | 36.25 | 23.39 |
| EER98049 | Sorghum | plastid | 36.25 | 23.02 |
| Zm00001d018927_P001 | Maize | mitochondrion | 36.88 | 22.26 |
| HORVU7Hr1G045420.1 | Barley | cytosol, peroxisome | 36.25 | 19.08 |
| Zm00001d007235_P001 | Maize | plasma membrane | 26.88 | 18.94 |
| Zm00001d049001_P001 | Maize | mitochondrion | 23.12 | 18.59 |
| GSMUA_Achr4P01650_001 | Banana | mitochondrion | 20.0 | 15.76 |
| Zm00001d045615_P001 | Maize | cytosol, endoplasmic reticulum, plastid | 26.88 | 9.79 |
Protein Annotations
| EnsemblPlants:Bra014634.1 | EnsemblPlants:Bra014634.1-P | EnsemblPlantsGene:Bra014634 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMEM14 | PANTHER:PTHR12668 | PANTHER:PTHR12668:SF18 | PFAM:PF03647 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000254458F | UniProt:M4DDR6 | MapMan:5.8.3 | : | : | : |
Description
AT3G57280 (E=3e-027) | unknown protein
Coordinates
chrA04:-:1890372..1891048
Molecular Weight (calculated)
17459.9 Da
IEP (calculated)
10.056
GRAVY (calculated)
0.594
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MRECLLSGGL VMSGGLLGFA FSRNLTSLST GVLYGGALLA LSTLSMKIWR QGKSSFPYIL GQAVLSAVVF WKNFTTYSMV FRYLCDYAAD CLALCLLACL
101: QLLNVLLMQT KKLFPAGLFA VVSAAMLCFY SYVVLSGGNP PPKKLKPSAS PSYRRNFHKL
101: QLLNVLLMQT KKLFPAGLFA VVSAAMLCFY SYVVLSGGNP PPKKLKPSAS PSYRRNFHKL
001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY
Arabidopsis Description
FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.