Factsheet for TraesCS2B01G350900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G331000.1
TraesCS2B01G351300.1
TraesCS2D01G332000.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G238200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57280.1	TraesCS2A01G331000.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS2B01G351300.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS2D01G332000.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS5A01G257000.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS5B01G256500.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS5D01G265600.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS7A01G240200.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS7B01G135800.1	AT4G26455.1	21798944
AT3G57280.1	TraesCS7D01G238200.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G331600.1	Wheat	mitochondrion, plastid	90.13	95.02
TraesCS2A01G331300.1	Wheat	plastid	94.85	94.85
HORVU2Hr1G081780.5	Barley	plastid	86.27	81.05
Zm00001d025663_P003	Maize	plastid	68.67	73.06
EES12340	Sorghum	plastid	68.67	72.07
Os04t0470300-01	Rice	plastid	68.24	71.3
Zm00001d037138_P001	Maize	extracellular	21.46	61.73
Zm00001d035128_P001	Maize	extracellular	29.61	53.49
Zm00001d036684_P001	Maize	plastid	21.46	51.55
Zm00001d031990_P001	Maize	extracellular	29.61	48.59
Solyc04g016440.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	29.18	47.22
CDX88938	Canola	extracellular	24.03	45.53
TraesCS7B01G127500.2	Wheat	plastid	44.64	43.33
CDY30992	Canola	plastid	32.19	42.86
PGSC0003DMT400021095	Potato	cytosol, nucleus, plasma membrane	32.62	39.58
AT3G57280.1	Thale cress	plastid	36.05	37.17
CDY33831	Canola	plastid	36.05	36.84
Bra014634.1-P	Field mustard	extracellular	24.89	36.25
Bra007316.1-P	Field mustard	plastid	33.48	35.94
GSMUA_Achr3P04170_001	Banana	plastid	37.77	35.63
CDX72054	Canola	plastid	33.91	35.59
CDX67684	Canola	plastid	34.33	35.4
CDY06118	Canola	plastid	33.05	35.32
GSMUA_Achr9P12790_001	Banana	plastid	37.34	35.08
Solyc10g079260.1.1	Tomato	plastid	34.33	34.78
TraesCS7B01G095100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	17.6	34.45
KRH66851	Soybean	plastid	33.05	33.48
KRG95172	Soybean	mitochondrion	32.62	33.04
PGSC0003DMT400033126	Potato	plastid	32.19	32.89
Zm00001d049001_P001	Maize	mitochondrion	27.9	32.66
Zm00001d007235_P001	Maize	plasma membrane	31.33	32.16
VIT_00s0252g00030.t01	Wine grape	plastid	30.47	31.0
GSMUA_Achr4P01650_001	Banana	mitochondrion	24.89	28.57

Protein Annotations

EnsemblPlants:TraesCS2B01G350900.1	EnsemblPlantsGene:TraesCS2B01G350900	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0016020	InterPro:TMEM14
PANTHER:PTHR12668	PANTHER:PTHR12668:SF16	PFAM:PF03647	SEG:seg	TMHMM:TMhelix	MapMan:5.8.3

Description

No Description!

Coordinates

chr2B:-:497876028..497878441

Molecular Weight (calculated)

24885.2 Da

IEP (calculated)

10.417

GRAVY (calculated)

0.227

Length

233 amino acids

Sequence
(BLAST)

001: MIKSPVSPSQ SHMAVAAAQL RGSATVAQRH VAFRVPSSCR WQRHPLAGSL KLSVSTSGVG GKPFGFSAKI ATKCANENTR TEELNSRSDQ AGEHVEAVED
101: VTPPKRSAKI HDFCFGIPFG GLLFCMGLLG YFFSRSTVSL VLGVAPGLAT LLLGTLSLNF WRSGRSSFLF ILGQAAISAV LAWKYSHAYL LTNRILPWGF
201: YASLSTAMAC FYAYVLLAGG NPPPKKLALA PSS

Best Arabidopsis Sequence Match ( AT3G57280.1 )
(BLAST)

001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY

Arabidopsis Description

FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.