Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- golgi 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G257000.1 | Wheat | cytosol, golgi, nucleus, plastid | 93.77 | 93.94 |
| TraesCS5D01G265600.1 | Wheat | nucleus | 93.22 | 92.21 |
| HORVU5Hr1G071910.1 | Barley | nucleus | 89.93 | 89.6 |
| Os09t0481300-01 | Rice | nucleus | 60.26 | 62.43 |
| EER96942 | Sorghum | cytosol, golgi, nucleus, plastid | 59.52 | 59.96 |
| Zm00001d005997_P002 | Maize | plastid | 58.42 | 59.29 |
| Zm00001d020879_P001 | Maize | cytosol, golgi, nucleus, plastid | 42.67 | 58.1 |
| TraesCS7B01G135800.1 | Wheat | cytosol, golgi, nucleus | 47.99 | 48.7 |
| GSMUA_Achr10P... | Banana | cytosol | 27.47 | 29.76 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 31.87 | 29.24 |
| TraesCS2B01G351300.1 | Wheat | cytosol, golgi, nucleus | 15.57 | 28.52 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 30.4 | 27.95 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 19.78 | 27.0 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 18.86 | 25.81 |
| Solyc07g066170.2.1 | Tomato | nucleus | 15.57 | 25.37 |
| CDY24192 | Canola | plastid | 13.55 | 24.42 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 18.68 | 24.29 |
| Bra026434.1-P | Field mustard | nucleus | 21.98 | 24.24 |
| CDX89333 | Canola | nucleus | 21.98 | 24.24 |
| CDX94330 | Canola | nucleus | 20.88 | 23.22 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 26.01 | 23.13 |
| PGSC0003DMT400022426 | Potato | nucleus | 24.36 | 22.7 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 18.32 | 22.62 |
| CDX82542 | Canola | plastid | 18.13 | 22.35 |
| CDY17403 | Canola | nucleus | 11.17 | 22.1 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 11.17 | 22.1 |
| AT5G56210.1 | Thale cress | nucleus | 20.33 | 21.81 |
| KRH56393 | Soybean | cytosol | 23.44 | 21.81 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 10.99 | 21.51 |
| AT4G26455.1 | Thale cress | nucleus | 19.23 | 21.47 |
| PGSC0003DMT400056956 | Potato | nucleus | 23.44 | 21.4 |
| KRH62532 | Soybean | endoplasmic reticulum | 22.71 | 21.2 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 19.6 | 20.66 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G256500.1 | EnsemblPlantsGene:TraesCS5B01G256500 | ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF1 | SEG:seg |
| MapMan:20.4.2.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:439230438..439233941
Molecular Weight (calculated)
57977.9 Da
IEP (calculated)
4.872
GRAVY (calculated)
-0.561
Length
546 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGANSVGS VGESPPPLSP PGRPAAKGRG LRRWRRIPRE HHEDDGGSPA GPVAPAAAAG TGAASAEVDL AQLHKRRLPV GADAPKGKQD AAAEDDSPVA
101: SVESSFVPPE APPSPSPAPA LTSLDPDLGL LIASAGFSVG AGGADSDNSD DRTSKSTALP RHDFSLAGFG RDRDRARSRA PGAAAHAKNI RTARARGAGA
201: RAVSAASSTV EPENSRSSVE SDLRSTGAAH ARKSSAGISS NGVHKFLYAD GDHSDDEAPS EHLRSAAGGF YKENGSAVGR MAMGNGDLYA HGHGFHEGSI
301: GKGENGGIHS GLDPYADSIS MLQSAQEALE NELQMFVEIG KESSDNSTDN YDENEWSSSP NCEDFSEEIS EKLKLLESKL EEASLLIDEK DSRILELDTL
401: NKTQPGETAL YNSKLLSLQS EVDQLLMEKM EAEIQCFILK RASEAWQPQT EGQGTFHEAQ KTLSEDHKQL EVKLRHTENR ARTLEDLVEK LESQCKELSN
501: ASEVLKLQAG ASRASLFCSV QLVLLCIAVW TFVARFLPSP PEFVPT
101: SVESSFVPPE APPSPSPAPA LTSLDPDLGL LIASAGFSVG AGGADSDNSD DRTSKSTALP RHDFSLAGFG RDRDRARSRA PGAAAHAKNI RTARARGAGA
201: RAVSAASSTV EPENSRSSVE SDLRSTGAAH ARKSSAGISS NGVHKFLYAD GDHSDDEAPS EHLRSAAGGF YKENGSAVGR MAMGNGDLYA HGHGFHEGSI
301: GKGENGGIHS GLDPYADSIS MLQSAQEALE NELQMFVEIG KESSDNSTDN YDENEWSSSP NCEDFSEEIS EKLKLLESKL EEASLLIDEK DSRILELDTL
401: NKTQPGETAL YNSKLLSLQS EVDQLLMEKM EAEIQCFILK RASEAWQPQT EGQGTFHEAQ KTLSEDHKQL EVKLRHTENR ARTLEDLVEK LESQCKELSN
501: ASEVLKLQAG ASRASLFCSV QLVLLCIAVW TFVARFLPSP PEFVPT
001: MDLESESSVL ESVEDNNGLI GDLDKELNSP VETSPLISKG FGLRKWKRRL RRDLVKDDTS VSMENSKALK RVLSGLVDPN AKQMHLPGPE VRQDSVGSVG
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
Arabidopsis Description
WIP2WPP domain-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH18]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.