Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G256500.1 | Wheat | cytosol, golgi, nucleus, plastid | 62.43 | 60.26 |
| TraesCS5A01G257000.1 | Wheat | cytosol, golgi, nucleus, plastid | 60.91 | 58.9 |
| TraesCS5D01G265600.1 | Wheat | nucleus | 60.91 | 58.15 |
| HORVU5Hr1G071910.1 | Barley | nucleus | 60.15 | 57.85 |
| Zm00001d005997_P002 | Maize | plastid | 58.06 | 56.88 |
| EER96942 | Sorghum | cytosol, golgi, nucleus, plastid | 57.87 | 56.27 |
| Zm00001d020879_P001 | Maize | cytosol, golgi, nucleus, plastid | 41.18 | 54.11 |
| Os08t0497900-01 | Rice | nucleus | 39.66 | 45.24 |
| GSMUA_Achr10P... | Banana | cytosol | 26.76 | 27.98 |
| Os04t0471300-01 | Rice | cytosol, golgi, nucleus | 15.56 | 27.15 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 30.17 | 26.72 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 29.79 | 26.43 |
| Solyc07g066170.2.1 | Tomato | nucleus | 15.37 | 24.18 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 26.95 | 23.13 |
| CDX89333 | Canola | nucleus | 21.06 | 22.42 |
| Bra026434.1-P | Field mustard | nucleus | 20.87 | 22.22 |
| PGSC0003DMT400022426 | Potato | nucleus | 24.48 | 22.01 |
| CDX94330 | Canola | nucleus | 19.92 | 21.38 |
| AT4G26455.1 | Thale cress | nucleus | 19.73 | 21.27 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 16.13 | 21.25 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 10.82 | 20.65 |
| PGSC0003DMT400056956 | Potato | nucleus | 23.34 | 20.57 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 16.32 | 20.48 |
| CDY24192 | Canola | plastid | 11.76 | 20.46 |
| CDY17403 | Canola | nucleus | 10.63 | 20.29 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 10.63 | 20.07 |
| KRH56393 | Soybean | cytosol | 22.01 | 19.76 |
| AT5G56210.1 | Thale cress | nucleus | 18.79 | 19.45 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 14.61 | 19.3 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 15.94 | 19.0 |
| KRH62532 | Soybean | endoplasmic reticulum | 21.06 | 18.97 |
| CDX82542 | Canola | plastid | 15.56 | 18.51 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 17.08 | 17.37 |
Protein Annotations
| EnsemblPlants:Os09t0481300-01 | EnsemblPlantsGene:Os09g0481300 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | ncoils:Coil |
| PANTHER:PTHR34562 | PANTHER:PTHR34562:SF1 | ProteinID:BAT08644.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000393B0DB |
| UniProt:A0A0P0XN73 | MapMan:20.4.2.1.2 | : | : | : | : |
Description
Similar to Rwp34 (Fragment). (Os09t0481300-01)
Coordinates
chr9:-:18470587..18473910
Molecular Weight (calculated)
56867.2 Da
IEP (calculated)
4.584
GRAVY (calculated)
-0.625
Length
527 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGGNSVNS AVESVAESPA PASPASNPTA PAAVTKGRGL RRWRRIPREH HEEGSPAAAA VEEVGSESPV ASVESSFAPQ EAPPSPPVQT KLDPDLGFLI
101: ASAGFSVGAG GADSDNSDDR ASKSSTNAAA PRHDFSFGGG FGRERDRPRS RAPGAAAHAK GIRTARTRGA HGARAATPTP SIVEPENSRS SVESNLRSSA
201: AAHARQSSAG ISSNGVHKVL YDDDDDDDDD AEQSDGEPPS EEAARSGAGG FYRENGSVVG RLVKGSSDSD ADDHGYDERS IGKGENGEIH SGLDPYVQSI
301: AMLRSAEEAI ENEIQKFIEM RNETCENSAN NHSETEWSSS CHFDESTEEL SEKLKLLESR LNEASTLIND KDSEILELDV LNHKQPKQHV LCNTELLSLQ
401: SDMDQLFLEK MEAETQCFIL TRASQAWNPL TEDQAAIFDI QKSLPEDHKQ LEAKLRHTEN RALMLEEMVE KLEAQCKDLA RTSEILKLQA RASRASLFCS
501: VQFVLLFIAV GTFLVRLWPS SSEFVPT
101: ASAGFSVGAG GADSDNSDDR ASKSSTNAAA PRHDFSFGGG FGRERDRPRS RAPGAAAHAK GIRTARTRGA HGARAATPTP SIVEPENSRS SVESNLRSSA
201: AAHARQSSAG ISSNGVHKVL YDDDDDDDDD AEQSDGEPPS EEAARSGAGG FYRENGSVVG RLVKGSSDSD ADDHGYDERS IGKGENGEIH SGLDPYVQSI
301: AMLRSAEEAI ENEIQKFIEM RNETCENSAN NHSETEWSSS CHFDESTEEL SEKLKLLESR LNEASTLIND KDSEILELDV LNHKQPKQHV LCNTELLSLQ
401: SDMDQLFLEK MEAETQCFIL TRASQAWNPL TEDQAAIFDI QKSLPEDHKQ LEAKLRHTEN RALMLEEMVE KLEAQCKDLA RTSEILKLQA RASRASLFCS
501: VQFVLLFIAV GTFLVRLWPS SSEFVPT
001: MDLESESSAL ESVDDNVLIQ QSASNVCDDG RSLDNGSCSD ESVKLLSTSN SVELGKPMSF DSPGDGGGAY SPVLKGQGLR KWRRIRRDLV KDTSANMENS
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
Arabidopsis Description
WIP1WPP domain-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.