Factsheet for Os03t0209400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
extracellular 3
plasma membrane 5
vacuole 3
endoplasmic reticulum 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0226300-01
Os01t0736900-01
Os02t0265900-01
Os02t0269000-01
Os05t0526400-01
Os05t0529000-01
Os06t0503400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01430.1	Os02t0269000-01	AT2G20130.1	21798944
AT5G01430.1	Os05t0529000-01	AT2G20130.1	21798944
AT5G01430.1	Os01t0226300-01	AT4G11220.1	21798944
AT5G01430.1	Os01t0736900-01	AT4G11220.1	21798944
AT5G01430.1	Os02t0265900-01	AT4G11220.1	21798944
AT5G01430.1	Os05t0526400-01	AT4G11220.1	21798944
AT5G01430.1	Os06t0503400-01	AT4G11220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028040_P002	Maize	plasma membrane	97.14	97.14
TraesCS4A01G051600.1	Wheat	plasma membrane	97.14	97.14
TraesCS4B01G252600.1	Wheat	plasma membrane	97.14	97.14
TraesCS4D01G252900.1	Wheat	plasma membrane	97.14	97.14
EER95301	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	97.14	97.14
GSMUA_Achr1P09820_001	Banana	extracellular, plasma membrane, vacuole	89.29	89.29
Os10t0337600-01	Rice	extracellular, plasma membrane, vacuole	87.86	87.86
GSMUA_AchrUn_...	Banana	plasma membrane	84.29	84.29
PGSC0003DMT400054623	Potato	plasma membrane	80.71	83.7
PGSC0003DMT400062004	Potato	plasma membrane	83.57	83.57
GSMUA_Achr4P06120_001	Banana	plasma membrane	82.14	82.14
Solyc02g069610.2.1	Tomato	extracellular, plasma membrane, vacuole	82.14	82.14
VIT_02s0012g00510.t01	Wine grape	extracellular, plasma membrane, vacuole	80.71	80.71
CDX80773	Canola	plasma membrane	79.29	79.29
CDY11201	Canola	plasma membrane	78.57	78.57
KRH73542	Soybean	extracellular, plasma membrane, vacuole	78.57	78.57
CDY04837	Canola	plasma membrane	78.57	78.57
Bra028903.1-P	Field mustard	plasma membrane	78.57	78.57
Bra005686.1-P	Field mustard	plasma membrane	78.57	78.57
AT5G01430.1	Thale cress	plasma membrane	77.86	77.86
AT3G49420.2	Thale cress	plasma membrane	77.86	77.86
KRH14583	Soybean	extracellular, plasma membrane, vacuole	77.14	77.14
KRH50610	Soybean	extracellular, plasma membrane, vacuole	77.14	77.14
CDY21217	Canola	plasma membrane	75.71	75.71
CDY49931	Canola	plasma membrane	72.14	74.81
Os07t0593400-00	Rice	extracellular, plasma membrane	55.71	70.27
Zm00001d048122_P003	Maize	plasma membrane	97.86	68.16
Bra021367.1-P	Field mustard	plasma membrane	69.29	65.54
HORVU4Hr1G069200.3	Barley	plastid	97.86	63.13
KRG89688	Soybean	plasma membrane	78.57	56.99
AT3G03180.3	Thale cress	plasma membrane	70.71	51.56
Os02t0602800-01	Rice	plasma membrane	47.86	49.63
Os07t0593332-00	Rice	plasma membrane	7.14	11.76

Protein Annotations

MapMan:35.1	EntrezGene:4332016	ProteinID:ABF94577.1	EMBL:AK059829	ProteinID:BAF11248.1	ProteinID:BAS82894.1
ProteinID:EEE58559.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	EnsemblPlantsGene:Os03g0209400	EnsemblPlants:Os03t0209400-01	PFAM:PF04178	PANTHER:PTHR21493	PANTHER:PTHR21493:SF9
UniProt:Q10Q55	TMHMM:TMhelix	UniParc:UPI0000DB48CF	InterPro:Vesicle_transpt_Got1/SFT2	RefSeq:XP_015632888.1	SEG:seg

Description

GLUTELIN PRECURSOR ACCUMULATION 4Vesicle transport protein, Regulation of protein export from ER in developing endosperm cells (Os03t0209400-01)

Coordinates

chr3:+:5707404..5710078

Molecular Weight (calculated)

15799.9 Da

IEP (calculated)

10.701

GRAVY (calculated)

0.844

Length

140 amino acids

Sequence
(BLAST)

001: MVSFEMNDLK KIGLGLTGFG VFFSFLGIIF FFDKGLIAMG NILFLSGLGL TIGLKSTMQF FTKPKNYKGT ISFGAGFFLV LIGWPFFGML LEAYGFVVLF
101: SGFWPTLVVF LQRIPIIGWI FQQPFVTSFL DRYRGKRVPV

Best Arabidopsis Sequence Match ( AT5G01430.1 )
(BLAST)

001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV

Arabidopsis Description

At3g49420 [Source:UniProtKB/TrEMBL;Acc:Q9SCL4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.