Factsheet for PGSC0003DMT400062004

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
extracellular 2
plasma membrane 4
vacuole 2
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000833
PGSC0003DMT400032086
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01430.1	PGSC0003DMT400000833	AT2G20130.1	21798944
AT5G01430.1	PGSC0003DMT400032086	AT4G11220.1	21798944
AT5G01430.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT5G01430.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054623	Potato	plasma membrane	88.57	91.85
VIT_02s0012g00510.t01	Wine grape	extracellular, plasma membrane, vacuole	87.14	87.14
TraesCS4A01G051600.1	Wheat	plasma membrane	84.29	84.29
TraesCS4B01G252600.1	Wheat	plasma membrane	84.29	84.29
TraesCS4D01G252900.1	Wheat	plasma membrane	84.29	84.29
Os03t0209400-01	Rice	plasma membrane	83.57	83.57
Zm00001d028040_P002	Maize	plasma membrane	83.57	83.57
AT3G49420.2	Thale cress	plasma membrane	82.86	82.86
KRH73542	Soybean	extracellular, plasma membrane, vacuole	82.86	82.86
EER95301	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	82.86	82.86
AT5G01430.1	Thale cress	plasma membrane	82.86	82.86
KRH14583	Soybean	extracellular, plasma membrane, vacuole	82.14	82.14
KRH50610	Soybean	extracellular, plasma membrane, vacuole	82.14	82.14
CDX80773	Canola	plasma membrane	82.14	82.14
Bra005686.1-P	Field mustard	plasma membrane	81.43	81.43
GSMUA_Achr1P09820_001	Banana	extracellular, plasma membrane, vacuole	81.43	81.43
GSMUA_AchrUn_...	Banana	plasma membrane	81.43	81.43
CDY11201	Canola	plasma membrane	81.43	81.43
CDY04837	Canola	plasma membrane	79.29	79.29
Bra028903.1-P	Field mustard	plasma membrane	79.29	79.29
Os10t0337600-01	Rice	extracellular, plasma membrane, vacuole	77.86	77.86
GSMUA_Achr4P06120_001	Banana	plasma membrane	75.0	75.0
CDY21217	Canola	plasma membrane	72.86	72.86
CDY49931	Canola	plasma membrane	68.57	71.11
EER97480	Sorghum	plasma membrane	69.29	69.29
TraesCS2D01G191300.1	Wheat	plasma membrane	68.57	68.57
Zm00001d022026_P001	Maize	cytosol, plasma membrane, vacuole	65.71	64.34
Bra021367.1-P	Field mustard	plasma membrane	67.86	64.19
Os07t0593400-00	Rice	extracellular, plasma membrane	48.57	61.26
KRG89688	Soybean	plasma membrane	83.57	60.62
TraesCS2B01G210100.1	Wheat	cytosol, plasma membrane, vacuole	67.86	60.13
Zm00001d048122_P003	Maize	plasma membrane	83.57	58.21
Zm00001d037011_P001	Maize	extracellular	26.43	56.92
HORVU4Hr1G069200.3	Barley	plastid	83.57	53.92
HORVU2Hr1G034610.1	Barley	extracellular	58.57	51.25
PGSC0003DMT400055667	Potato	extracellular, plasma membrane, vacuole	46.43	50.0
AT3G03180.3	Thale cress	plasma membrane	67.86	49.48

Protein Annotations

EnsemblPlants:PGSC0003DMT400062004	EnsemblPlantsGene:PGSC0003DMG400024130	EntrezGene:102589389	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	PANTHER:PTHR21493	PANTHER:PTHR21493:SF9
PFAM:PF04178	PGSC:PGSC0003DMG400024130	RefSeq:XP_006340067.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000295EA03
UniProt:M1C8C8	MapMan:35.1	:	:	:	:

Description

Golgi transport 1 protein B [Source:PGSC_GENE;Acc:PGSC0003DMG400024130]

Coordinates

chr1:+:15352131..15359704

Molecular Weight (calculated)

15844.9 Da

IEP (calculated)

10.871

GRAVY (calculated)

0.791

Length

140 amino acids

Sequence
(BLAST)

001: MVSFEMNDRK KIGLGLTGFG VFFSFLGIIF FFDKGLIAMG NILFFSGVAL TIGLKSSLQF FMKRSNYKGT AAFGAGFFFV IIGWPILGMI LEAYGFIVLF
101: SGFWPTLSVF LQKIPILGWI FQQPFVRSFF DRYHGKRVPV

Best Arabidopsis Sequence Match ( AT5G01430.1 )
(BLAST)

001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV

Arabidopsis Description

At3g49420 [Source:UniProtKB/TrEMBL;Acc:Q9SCL4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.