Factsheet for Bra028903.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1
extracellular 3
plasma membrane 5
vacuole 3
endoplasmic reticulum 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000739.1-P
Bra012567.1-P
Bra013361.1-P
Bra035242.1-P
Bra041043.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01430.1	Bra041043.1-P	AT2G20130.1	21798944
AT5G01430.1	Bra000739.1-P	AT4G11220.1	21798944
AT5G01430.1	Bra035242.1-P	AT4G11220.1	21798944
AT5G01430.1	Bra012567.1-P	AT4G19030.1	21798944
AT5G01430.1	Bra013361.1-P	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04837	Canola	plasma membrane	100.0	100.0
Bra005686.1-P	Field mustard	plasma membrane	94.29	94.29
AT5G01430.1	Thale cress	plasma membrane	92.86	92.86
AT3G49420.2	Thale cress	plasma membrane	92.86	92.86
VIT_02s0012g00510.t01	Wine grape	extracellular, plasma membrane, vacuole	86.43	86.43
Solyc02g069610.2.1	Tomato	extracellular, plasma membrane, vacuole	82.86	82.86
PGSC0003DMT400054623	Potato	plasma membrane	79.29	82.22
TraesCS4D01G252900.1	Wheat	plasma membrane	80.0	80.0
TraesCS4B01G252600.1	Wheat	plasma membrane	80.0	80.0
TraesCS4A01G051600.1	Wheat	plasma membrane	80.0	80.0
PGSC0003DMT400062004	Potato	plasma membrane	79.29	79.29
KRH50610	Soybean	extracellular, plasma membrane, vacuole	79.29	79.29
KRH73542	Soybean	extracellular, plasma membrane, vacuole	78.57	78.57
Os03t0209400-01	Rice	plasma membrane	78.57	78.57
KRH14583	Soybean	extracellular, plasma membrane, vacuole	78.57	78.57
EER95301	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	78.57	78.57
Zm00001d028040_P002	Maize	plasma membrane	77.86	77.86
GSMUA_Achr1P09820_001	Banana	extracellular, plasma membrane, vacuole	77.14	77.14
GSMUA_AchrUn_...	Banana	plasma membrane	75.0	75.0
GSMUA_Achr4P06120_001	Banana	plasma membrane	73.57	73.57
Os10t0337600-01	Rice	extracellular, plasma membrane, vacuole	72.86	72.86
TraesCS2D01G191300.1	Wheat	plasma membrane	70.71	70.71
EER97480	Sorghum	plasma membrane	67.86	67.86
Bra021367.1-P	Field mustard	plasma membrane	68.57	64.86
Os07t0593400-00	Rice	extracellular, plasma membrane	50.0	63.06
Zm00001d022026_P001	Maize	cytosol, plasma membrane, vacuole	64.29	62.94
TraesCS2B01G210100.1	Wheat	cytosol, plasma membrane, vacuole	70.0	62.03
Zm00001d037011_P001	Maize	extracellular	27.86	60.0
KRG89688	Soybean	plasma membrane	79.29	57.51
Zm00001d048122_P003	Maize	plasma membrane	77.86	54.23
HORVU2Hr1G034610.1	Barley	extracellular	61.43	53.75
HORVU4Hr1G069200.3	Barley	plastid	80.0	51.61
Bra015452.1-P	Field mustard	extracellular	44.29	36.26

Protein Annotations

EnsemblPlants:Bra028903.1	EnsemblPlants:Bra028903.1-P	EnsemblPlantsGene:Bra028903	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	PANTHER:PTHR21493	PANTHER:PTHR21493:SF9
PFAM:PF04178	SEG:seg	TMHMM:TMhelix	UniParc:UPI00025435CE	UniProt:M4EJD7	MapMan:35.1

Description

AT3G49420 (E=5e-068) | Got1-like family protein

Coordinates

chrA02:+:1498479..1499398

Molecular Weight (calculated)

16004.2 Da

IEP (calculated)

10.811

GRAVY (calculated)

0.688

Length

140 amino acids

Sequence
(BLAST)

001: MMSFEMNDRK KIGLGLTAFG VFFSFLGIMF VFDKGLLAMG NILFISGVSL TIGLKSTMQF FTKRQNYKGT ISFGSGFFFV LLGWPIFGMM LETYGFFVLF
101: SGFWPTLAVF VQKIPVLGWI IQLPYIRSFF DKYRGKRVPV

Best Arabidopsis Sequence Match ( AT5G01430.1 )
(BLAST)

001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV

Arabidopsis Description

At3g49420 [Source:UniProtKB/TrEMBL;Acc:Q9SCL4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.