Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER97480 | Sorghum | plasma membrane | 92.31 | 94.29 |
| Os07t0593400-00 | Rice | extracellular, plasma membrane | 65.73 | 84.68 |
| TraesCS2D01G191300.1 | Wheat | plasma membrane | 80.42 | 82.14 |
| Zm00001d037011_P001 | Maize | extracellular | 37.06 | 81.54 |
| GSMUA_Achr1P09820_001 | Banana | extracellular, plasma membrane, vacuole | 72.03 | 73.57 |
| TraesCS2B01G210100.1 | Wheat | cytosol, plasma membrane, vacuole | 79.72 | 72.15 |
| Zm00001d028040_P002 | Maize | plasma membrane | 69.23 | 70.71 |
| GSMUA_Achr4P06120_001 | Banana | plasma membrane | 67.83 | 69.29 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 67.13 | 68.57 |
| KRH50610 | Soybean | extracellular, plasma membrane, vacuole | 67.13 | 68.57 |
| VIT_02s0012g00510.t01 | Wine grape | extracellular, plasma membrane, vacuole | 66.43 | 67.86 |
| PGSC0003DMT400054623 | Potato | plasma membrane | 62.24 | 65.93 |
| PGSC0003DMT400062004 | Potato | plasma membrane | 64.34 | 65.71 |
| CDY49931 | Canola | plasma membrane | 61.54 | 65.19 |
| CDY21217 | Canola | plasma membrane | 63.64 | 65.0 |
| Solyc02g069610.2.1 | Tomato | extracellular, plasma membrane, vacuole | 63.64 | 65.0 |
| KRH73542 | Soybean | extracellular, plasma membrane, vacuole | 63.64 | 65.0 |
| KRH14583 | Soybean | extracellular, plasma membrane, vacuole | 63.64 | 65.0 |
| Bra028903.1-P | Field mustard | plasma membrane | 62.94 | 64.29 |
| CDY04837 | Canola | plasma membrane | 62.94 | 64.29 |
| Bra005686.1-P | Field mustard | plasma membrane | 62.24 | 63.57 |
| CDX80773 | Canola | plasma membrane | 62.24 | 63.57 |
| CDY11201 | Canola | plasma membrane | 62.24 | 63.57 |
| AT5G01430.1 | Thale cress | plasma membrane | 62.24 | 63.57 |
| AT3G49420.2 | Thale cress | plasma membrane | 62.24 | 63.57 |
| HORVU2Hr1G034610.1 | Barley | extracellular | 70.63 | 63.12 |
| Bra021367.1-P | Field mustard | plasma membrane | 59.44 | 57.43 |
| Zm00001d048122_P003 | Maize | plasma membrane | 69.93 | 49.75 |
| KRG89688 | Soybean | plasma membrane | 67.13 | 49.74 |
| AT3G03180.3 | Thale cress | plasma membrane | 58.74 | 43.75 |
| Zm00001d051009_P002 | Maize | plasma membrane | 40.56 | 42.96 |
Protein Annotations
| EnsemblPlants:Zm00001d022026_P001 | EnsemblPlants:Zm00001d022026_T001 | EnsemblPlantsGene:Zm00001d022026 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | PANTHER:PTHR21493 | PANTHER:PTHR21493:SF9 |
| PFAM:PF04178 | ProteinID:ONM59327.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000220C8FC | UniProt:A0A096PV52 |
| MapMan:35.1 | : | : | : | : | : |
Description
Golgi transport 1 protein B
Coordinates
chr7:+:168235505..168239964
Molecular Weight (calculated)
15910.0 Da
IEP (calculated)
10.751
GRAVY (calculated)
0.762
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSFEMNDLK MSTEIGLGLT GFGVLFTLLG IIMLFDKGFL AMGNILFVSG VLLTIGLKPT VQFFTKPKNH KGSIFFGFGF FLVLIGWPVS GMLVESYGFI
101: TLFSGFWPTA AVYLQKSPSF GWIFHHPLVT SLITRFRGRR VPV
101: TLFSGFWPTA AVYLQKSPSF GWIFHHPLVT SLITRFRGRR VPV
001: MASLEMNDLK KIGLGLTGFG VFFTFLGVIF VFDKGLIAMG NILFLAGVTL TIGINPAIQF FTKRQNFKGT ISFGLGFLLV VFGWPIFGLL LESYGFLVLF
101: SGFWPTLAVF LQRIPLLGWL LQQPYIRSLL DRYRGRRVPV
101: SGFWPTLAVF LQRIPLLGWL LQQPYIRSLL DRYRGRRVPV
Arabidopsis Description
Got1/Sft2-like vescicle transport protein family [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRD1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.