Factsheet for Zm00001d028040_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007647_P001
Zm00001d008982_P001
Zm00001d010806_P001
Zm00001d012776_P001
Zm00001d016021_P001
Zm00001d016041_P001
Zm00001d020229_P001
Zm00001d020729_P001
Zm00001d025321_P001
Zm00001d037453_P001
Zm00001d038756_P001
Zm00001d038768_P001
Zm00001d039316_P001
Zm00001d043551_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01430.1	Zm00001d007647_P001	AT2G20130.1	21798944
AT5G01430.1	Zm00001d010806_P001	AT2G20130.1	21798944
AT5G01430.1	Zm00001d016021_P001	AT2G20130.1	21798944
AT5G01430.1	Zm00001d025321_P001	AT2G20130.1	21798944
AT5G01430.1	Zm00001d038756_P001	AT2G20130.1	21798944
AT5G01430.1	Zm00001d008982_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d012776_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d016041_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d020229_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d020729_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d037453_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d038768_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d039316_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d043551_P003	AT4G11220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95301	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	99.29	99.29
TraesCS4D01G252900.1	Wheat	plasma membrane	97.86	97.86
TraesCS4B01G252600.1	Wheat	plasma membrane	97.86	97.86
TraesCS4A01G051600.1	Wheat	plasma membrane	97.86	97.86
Os03t0209400-01	Rice	plasma membrane	97.14	97.14
GSMUA_Achr1P09820_001	Banana	extracellular, plasma membrane, vacuole	88.57	88.57
GSMUA_AchrUn_...	Banana	plasma membrane	85.0	85.0
PGSC0003DMT400062004	Potato	plasma membrane	83.57	83.57
GSMUA_Achr4P06120_001	Banana	plasma membrane	82.86	82.86
PGSC0003DMT400054623	Potato	plasma membrane	78.57	81.48
VIT_02s0012g00510.t01	Wine grape	extracellular, plasma membrane, vacuole	81.43	81.43
Solyc02g069610.2.1	Tomato	extracellular, plasma membrane, vacuole	81.43	81.43
CDX80773	Canola	plasma membrane	79.29	79.29
CDY11201	Canola	plasma membrane	78.57	78.57
Bra005686.1-P	Field mustard	plasma membrane	78.57	78.57
KRH50610	Soybean	extracellular, plasma membrane, vacuole	77.86	77.86
AT3G49420.2	Thale cress	plasma membrane	77.86	77.86
AT5G01430.1	Thale cress	plasma membrane	77.86	77.86
Bra028903.1-P	Field mustard	plasma membrane	77.86	77.86
KRH73542	Soybean	extracellular, plasma membrane, vacuole	77.86	77.86
KRH14583	Soybean	extracellular, plasma membrane, vacuole	77.86	77.86
CDY04837	Canola	plasma membrane	77.86	77.86
CDY21217	Canola	plasma membrane	74.29	74.29
CDY49931	Canola	plasma membrane	70.71	73.33
Zm00001d022026_P001	Maize	cytosol, plasma membrane, vacuole	70.71	69.23
Zm00001d048122_P003	Maize	plasma membrane	97.14	67.66
Zm00001d037011_P001	Maize	extracellular	30.0	64.62
Bra021367.1-P	Field mustard	plasma membrane	67.86	64.19
HORVU4Hr1G069200.3	Barley	plastid	97.14	62.67
KRG89688	Soybean	plasma membrane	79.29	57.51
Zm00001d051009_P002	Maize	plasma membrane	49.29	51.11
AT3G03180.3	Thale cress	plasma membrane	69.29	50.52

Protein Annotations

EMBL:BT038141	EMBL:EU967470	EnsemblPlants:Zm00001d028040_P002	EnsemblPlants:Zm00001d028040_T002	EnsemblPlantsGene:Zm00001d028040	EntrezGene:100284198
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
InterPro:Vesicle_transpt_Got1/SFT2	PANTHER:PTHR21493	PANTHER:PTHR21493:SF9	PFAM:PF04178	ProteinID:ONL94558.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI00017B6B9B	UniProt:B4FM03	MapMan:35.1	:	:

Description

Got1/Sft2-like vescicle transport protein family

Coordinates

chr1:-:21294005..21296983

Molecular Weight (calculated)

15801.9 Da

IEP (calculated)

10.701

GRAVY (calculated)

0.811

Length

140 amino acids

Sequence
(BLAST)

001: MVSFEMNDLK KIGLGLTGFG IFFSFLGIVF FFDKGLIAMG NILFLSGLGL TIGLKSTMQF FTKPKNYKGT ISFGAGFFLV LIGWPFFGML LEAYGFIVLF
101: SGFWPTLSVF LQRIPIIGWI FQQPFVTSFL DRYRGKRVPV

Best Arabidopsis Sequence Match ( AT5G01430.1 )
(BLAST)

001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV

Arabidopsis Description

At3g49420 [Source:UniProtKB/TrEMBL;Acc:Q9SCL4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.