Factsheet for HORVU4Hr1G069200.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G081700.1
HORVU1Hr1G082010.3
HORVU3Hr1G030760.2
HORVU3Hr1G069970.2
HORVU7Hr1G075700.2
HORVU7Hr1G081290.4
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01430.1	HORVU1Hr1G081700.1	AT2G20130.1	21798944
AT5G01430.1	HORVU1Hr1G082010.3	AT4G11220.1	21798944
AT5G01430.1	HORVU3Hr1G030760.2	AT4G11220.1	21798944
AT5G01430.1	HORVU3Hr1G069970.2	AT4G11220.1	21798944
AT5G01430.1	HORVU7Hr1G075700.2	AT4G11220.1	21798944
AT5G01430.1	HORVU7Hr1G081290.4	AT4G11220.1	21798944
AT5G01430.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G051600.1	Wheat	plasma membrane	64.06	99.29
TraesCS4B01G252600.1	Wheat	plasma membrane	64.06	99.29
TraesCS4D01G252900.1	Wheat	plasma membrane	64.06	99.29
Os03t0209400-01	Rice	plasma membrane	63.13	97.86
EER95301	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	63.13	97.86
Zm00001d028040_P002	Maize	plasma membrane	62.67	97.14
GSMUA_Achr1P09820_001	Banana	extracellular, plasma membrane, vacuole	57.6	89.29
GSMUA_AchrUn_...	Banana	plasma membrane	54.84	85.0
PGSC0003DMT400054623	Potato	plasma membrane	52.53	84.44
Solyc02g069610.2.1	Tomato	extracellular, plasma membrane, vacuole	54.38	84.29
PGSC0003DMT400062004	Potato	plasma membrane	53.92	83.57
VIT_02s0012g00510.t01	Wine grape	extracellular, plasma membrane, vacuole	53.46	82.86
GSMUA_Achr4P06120_001	Banana	plasma membrane	52.53	81.43
CDX80773	Canola	plasma membrane	52.53	81.43
CDY11201	Canola	plasma membrane	52.07	80.71
Bra005686.1-P	Field mustard	plasma membrane	52.07	80.71
CDY04837	Canola	plasma membrane	51.61	80.0
Bra028903.1-P	Field mustard	plasma membrane	51.61	80.0
AT5G01430.1	Thale cress	plasma membrane	51.61	80.0
AT3G49420.2	Thale cress	plasma membrane	51.61	80.0
KRH73542	Soybean	extracellular, plasma membrane, vacuole	51.15	79.29
KRH14583	Soybean	extracellular, plasma membrane, vacuole	50.23	77.86
KRH50610	Soybean	extracellular, plasma membrane, vacuole	50.23	77.86
CDY21217	Canola	plasma membrane	49.31	76.43
CDY49931	Canola	plasma membrane	47.0	75.56
Zm00001d048122_P003	Maize	plasma membrane	64.52	69.65
Bra021367.1-P	Field mustard	plasma membrane	45.16	66.22
KRG89688	Soybean	plasma membrane	51.15	57.51
HORVU2Hr1G034610.1	Barley	extracellular	42.4	57.5
AT3G03180.3	Thale cress	plasma membrane	46.08	52.08
HORVU6Hr1G054720.6	Barley	plasma membrane, vacuole	26.27	36.31

Protein Annotations

EMBL:AK368203	EnsemblPlants:HORVU4Hr1G069200.3	EnsemblPlantsGene:HORVU4Hr1G069200	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	PANTHER:PTHR21493	PANTHER:PTHR21493:SF9
PFAM:PF04178	SEG:seg	TMHMM:TMhelix	UniParc:UPI000B461D8C	UniProt:A0A287PI85	MapMan:35.1

Description

No Description!

Coordinates

chrchr4H:-:569015165..569018147

Molecular Weight (calculated)

23890.4 Da

IEP (calculated)

11.226

GRAVY (calculated)

0.224

Length

217 amino acids

Sequence
(BLAST)

001: QSHRSKSHSS RSPSRYLHSR TEKKHTGVEP ISAGPRSPPH SSGQPPLTRR PLAAFPVAGA ASALQDFACS SPPVPSKMVS FEMNDLKKIG LGLTGFGVFF
101: SFLGIVFFFD KGLIAMGNIL FLSGLGLTIG LKSTMQFFTK PKNYKGTISF GAGFFLVLIG WPFFGMLLEA YGFVVLFSGF WPTLAVFLQR IPILGWIFQQ
201: PFVTSFLDRY RGKRVPV

Best Arabidopsis Sequence Match ( AT5G01430.1 )
(BLAST)

001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV

Arabidopsis Description

At3g49420 [Source:UniProtKB/TrEMBL;Acc:Q9SCL4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.