Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 1
- extracellular 2
- plasma membrane 4
- vacuole 2
- endoplasmic reticulum 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G01430.1 | Thale cress | plasma membrane | 100.0 | 100.0 |
| Bra005686.1-P | Field mustard | plasma membrane | 95.71 | 95.71 |
| CDY11201 | Canola | plasma membrane | 95.71 | 95.71 |
| CDX80773 | Canola | plasma membrane | 95.0 | 95.0 |
| Bra028903.1-P | Field mustard | plasma membrane | 92.86 | 92.86 |
| CDY04837 | Canola | plasma membrane | 92.86 | 92.86 |
| VIT_02s0012g00510.t01 | Wine grape | extracellular, plasma membrane, vacuole | 90.0 | 90.0 |
| Solyc02g069610.2.1 | Tomato | extracellular, plasma membrane, vacuole | 87.14 | 87.14 |
| PGSC0003DMT400054623 | Potato | plasma membrane | 82.86 | 85.93 |
| PGSC0003DMT400062004 | Potato | plasma membrane | 82.86 | 82.86 |
| KRH73542 | Soybean | extracellular, plasma membrane, vacuole | 81.43 | 81.43 |
| KRH50610 | Soybean | extracellular, plasma membrane, vacuole | 81.43 | 81.43 |
| KRH14583 | Soybean | extracellular, plasma membrane, vacuole | 81.43 | 81.43 |
| TraesCS4B01G252600.1 | Wheat | plasma membrane | 80.0 | 80.0 |
| TraesCS4A01G051600.1 | Wheat | plasma membrane | 80.0 | 80.0 |
| TraesCS4D01G252900.1 | Wheat | plasma membrane | 80.0 | 80.0 |
| EER95301 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 78.57 | 78.57 |
| Zm00001d028040_P002 | Maize | plasma membrane | 77.86 | 77.86 |
| Os03t0209400-01 | Rice | plasma membrane | 77.86 | 77.86 |
| GSMUA_Achr1P09820_001 | Banana | extracellular, plasma membrane, vacuole | 77.14 | 77.14 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 75.0 | 75.0 |
| GSMUA_Achr4P06120_001 | Banana | plasma membrane | 72.86 | 72.86 |
| Os10t0337600-01 | Rice | extracellular, plasma membrane, vacuole | 72.14 | 72.14 |
| TraesCS2D01G191300.1 | Wheat | plasma membrane | 69.29 | 69.29 |
| EER97480 | Sorghum | plasma membrane | 67.86 | 67.86 |
| Zm00001d022026_P001 | Maize | cytosol, plasma membrane, vacuole | 63.57 | 62.24 |
| Os07t0593400-00 | Rice | extracellular, plasma membrane | 48.57 | 61.26 |
| TraesCS2B01G210100.1 | Wheat | cytosol, plasma membrane, vacuole | 68.57 | 60.76 |
| Zm00001d037011_P001 | Maize | extracellular | 27.86 | 60.0 |
| KRG89688 | Soybean | plasma membrane | 81.43 | 59.07 |
| Zm00001d048122_P003 | Maize | plasma membrane | 78.57 | 54.73 |
| HORVU2Hr1G034610.1 | Barley | extracellular | 60.0 | 52.5 |
| HORVU4Hr1G069200.3 | Barley | plastid | 80.0 | 51.61 |
| AT3G03180.3 | Thale cress | plasma membrane | 70.71 | 51.56 |
| AT1G05785.6 | Thale cress | plasma membrane | 45.0 | 36.42 |
Protein Annotations
| MapMan:35.1 | EntrezGene:824104 | EntrezGene:831915 | UniProt:A0A178UEX8 | ProteinID:AED90342.1 | ProteinID:AED90343.1 |
| ProteinID:AEE78540.1 | ProteinID:ANM65140.1 | ProteinID:ANM65141.1 | ArrayExpress:AT3G49420 | EnsemblPlantsGene:AT3G49420 | RefSeq:AT3G49420 |
| TAIR:AT3G49420 | RefSeq:AT3G49420-TAIR-G | EnsemblPlants:AT3G49420.2 | EMBL:AY045875 | EMBL:AY062841 | EMBL:AY085005 |
| EMBL:AY091202 | Unigene:At.73030 | EMBL:BT006534 | ProteinID:CAB62447.1 | ProteinID:CAB81926.1 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | RefSeq:NP_001190200.1 |
| RefSeq:NP_001327134.1 | RefSeq:NP_001327135.1 | RefSeq:NP_190511.1 | RefSeq:NP_195763.1 | ProteinID:OAO91824.1 | ProteinID:OAP07033.1 |
| PFAM:PF04178 | PANTHER:PTHR21493 | PANTHER:PTHR21493:SF9 | UniProt:Q9SCL4 | TMHMM:TMhelix | UniParc:UPI000009D0DD |
| InterPro:Vesicle_transpt_Got1/SFT2 | SEG:seg | : | : | : | : |
Description
At3g49420 [Source:UniProtKB/TrEMBL;Acc:Q9SCL4]
Coordinates
chr3:+:18329387..18331431
Molecular Weight (calculated)
15987.2 Da
IEP (calculated)
10.811
GRAVY (calculated)
0.684
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.