CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

plastid 1
nucleus 1
extracellular 3
plasma membrane 4
vacuole 3
endoplasmic reticulum 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89811
EES19841
EES19854
KXG31516
KXG33320
OQU84758
OQU84787

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01430.1	EES19854	AT2G20130.1	21798944
AT5G01430.1	OQU84787	AT2G20130.1	21798944
AT5G01430.1	EER89811	AT4G11220.1	21798944
AT5G01430.1	EES19841	AT4G11220.1	21798944
AT5G01430.1	KXG31516	AT4G11220.1	21798944
AT5G01430.1	KXG33320	AT4G11220.1	21798944
AT5G01430.1	OQU84758	AT4G11220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028040_P002	Maize	plasma membrane	99.29	99.29
TraesCS4D01G252900.1	Wheat	plasma membrane	98.57	98.57
TraesCS4B01G252600.1	Wheat	plasma membrane	98.57	98.57
TraesCS4A01G051600.1	Wheat	plasma membrane	98.57	98.57
Os03t0209400-01	Rice	plasma membrane	97.14	97.14
GSMUA_Achr1P09820_001	Banana	extracellular, plasma membrane, vacuole	89.29	89.29
GSMUA_AchrUn_...	Banana	plasma membrane	85.71	85.71
GSMUA_Achr4P06120_001	Banana	plasma membrane	83.57	83.57
PGSC0003DMT400062004	Potato	plasma membrane	82.86	82.86
PGSC0003DMT400054623	Potato	plasma membrane	79.29	82.22
VIT_02s0012g00510.t01	Wine grape	extracellular, plasma membrane, vacuole	82.14	82.14
Solyc02g069610.2.1	Tomato	extracellular, plasma membrane, vacuole	82.14	82.14
CDX80773	Canola	plasma membrane	80.0	80.0
CDY11201	Canola	plasma membrane	79.29	79.29
Bra005686.1-P	Field mustard	plasma membrane	79.29	79.29
AT3G49420.2	Thale cress	plasma membrane	78.57	78.57
CDY04837	Canola	plasma membrane	78.57	78.57
AT5G01430.1	Thale cress	plasma membrane	78.57	78.57
Bra028903.1-P	Field mustard	plasma membrane	78.57	78.57
KRH73542	Soybean	extracellular, plasma membrane, vacuole	78.57	78.57
KRH50610	Soybean	extracellular, plasma membrane, vacuole	78.57	78.57
KRH14583	Soybean	extracellular, plasma membrane, vacuole	78.57	78.57
CDY21217	Canola	plasma membrane	75.0	75.0
CDY49931	Canola	plasma membrane	71.43	74.07
EER97480	Sorghum	plasma membrane	71.43	71.43
Bra021367.1-P	Field mustard	plasma membrane	68.57	64.86
HORVU4Hr1G069200.3	Barley	plastid	97.86	63.13
KRG89688	Soybean	plasma membrane	80.0	58.03
EES05385	Sorghum	plasma membrane	49.29	51.11
AT3G03180.3	Thale cress	plasma membrane	70.0	51.04

Protein Annotations

EnsemblPlants:EER95301	EnsemblPlantsGene:SORBI_3001G461900	EntrezGene:8081853	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	PANTHER:PTHR21493	PANTHER:PTHR21493:SF9
PFAM:PF04178	ProteinID:EER95301	ProteinID:EER95301.1	RefSeq:XP_002468303.1	SEG:seg	TMHMM:TMhelix
unigene:Sbi.11864	UniParc:UPI0001A83462	UniProt:C5WTP9	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr1:-:73659841..73663183

Molecular Weight (calculated)

15785.9 Da

IEP (calculated)

10.701

GRAVY (calculated)

0.829

Length

140 amino acids

Sequence
(BLAST)

001: MVSFEMNDLK KIGLGLTGFG IFFSFLGIVF FFDKGLIAMG NILFLSGLGL TIGLKSTMQF FTKPKNYKGT ISFGAGFFLV LIGWPFFGML LEAYGFIVLF
101: SGFWPTLAVF LQRIPIIGWI FQQPFVTSFL DRYRGKRVPV

Best Arabidopsis Sequence Match ( AT5G01430.1 )
(BLAST)

001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV

Arabidopsis Description

At3g49420 [Source:UniProtKB/TrEMBL;Acc:Q9SCL4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.