CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00126
EES00709
EES02699
EES03880
EES15193
EES19854
KXG22142
KXG23692
KXG28257
OQU77594
OQU84787

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20130.1	EES19854	AT2G20130.1	21798944
AT2G20130.1	OQU84787	AT2G20130.1	21798944
AT2G20130.1	EES00126	AT3G13710.1	21798944
AT2G20130.1	OQU77594	AT3G13710.1	21798944
AT2G20130.1	EES00709	AT4G02080.1	21798944
AT2G20130.1	EES02699	AT4G02080.1	21798944
AT2G20130.1	EES15193	AT4G02080.1	21798944
AT2G20130.1	KXG23692	AT4G02080.1	21798944
AT2G20130.1	KXG28257	AT4G02080.1	21798944
AT2G20130.1	EES03880	AT5G02040.1	21798944
AT2G20130.1	KXG22142	AT5G02040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038756_P001	Maize	cytosol, peroxisome, plasma membrane	99.27	99.27
Os05t0529000-01	Rice	cytosol, peroxisome, plasma membrane	87.55	87.55
TraesCS1B01G363400.1	Wheat	golgi, peroxisome, vacuole	81.69	81.69
TraesCS1D01G351700.1	Wheat	golgi, peroxisome, plasma membrane	85.35	81.47
TraesCS1A01G348700.1	Wheat	golgi, peroxisome, plasma membrane	85.35	81.47
VIT_11s0016g03780.t01	Wine grape	plasma membrane	75.09	77.07
GSMUA_Achr6P22910_001	Banana	plasma membrane	72.16	76.65
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	71.79	76.56
Solyc12g007130.1.1	Tomato	plasma membrane	71.06	75.78
KRH48364	Soybean	cytosol, peroxisome, plasma membrane	72.89	75.09
KRH39309	Soybean	cytosol, peroxisome, plasma membrane	72.89	75.09
CDY50615	Canola	plasma membrane	68.5	72.2
CDY69713	Canola	plasma membrane	68.86	72.03
GSMUA_Achr3P15700_001	Banana	cytosol, peroxisome, plasma membrane	72.53	72.0
GSMUA_Achr8P27800_001	Banana	cytosol, endoplasmic reticulum, nucleus	72.16	71.9
Bra015065.1-P	Field mustard	plasma membrane	69.23	71.86
CDX93027	Canola	plasma membrane	69.23	70.52
Bra013250.1-P	Field mustard	plasma membrane	69.23	70.52
CDY46483	Canola	plasma membrane	67.4	70.23
CDY05723	Canola	plasma membrane	67.4	70.23
AT2G20120.1	Thale cress	plasma membrane	68.86	70.15
AT2G20130.1	Thale cress	plasma membrane	65.57	69.92
CDY31990	Canola	plasma membrane	67.77	69.81
Bra041043.1-P	Field mustard	plasma membrane	67.77	69.81
HORVU1Hr1G081700.1	Barley	mitochondrion	85.71	69.64
EES15972	Sorghum	golgi, peroxisome, vacuole	60.07	58.78
EES03944	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	54.58	57.75
EES18295	Sorghum	plasma membrane	54.95	56.6
OQU84787	Sorghum	nucleus, peroxisome, plasma membrane	67.77	51.25

Protein Annotations

EnsemblPlants:EES19854	EnsemblPlantsGene:SORBI_3009G207000	EntrezGene:8068965	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0016020	GO:GO:0016021	InterPro:DUF502	PANTHER:PTHR31876
PANTHER:PTHR31876:SF1	PFAM:PF04367	ProteinID:EES19854	ProteinID:EES19854.1	RefSeq:XP_002441424.1	SEG:seg
TMHMM:TMhelix	unigene:Sbi.8539	UniParc:UPI0001A8915D	UniProt:C5Z1G5	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr9:-:55471984..55475756

Molecular Weight (calculated)

29876.2 Da

IEP (calculated)

8.212

GRAVY (calculated)

0.211

Length

273 amino acids

Sequence
(BLAST)

001: MGDNKSPLSL SPMGGRDRDR ELLIPVSGGG SAPGDGVEDG DRASSASAAL SSSGREAFHK VVRSWASKKF MTGCVILFPI AITFYITWWF IHFVDGFFSP
101: IYAQLGINIF GLGFITSVTF IFLIGVFMSS WVGASVLSLG EWIIKRMPLV RHIYNASKQI SAAISPDQNK QAFKEVVIIR HPRVGEYAFG FITSSVSLQS
201: YSGQEDLYCV YVPTNHLYIG DIFMVNSKDV IRPNLSVREG IEIVVSGGMS MPQILSTLDP QMILGDRTGP SRS

Best Arabidopsis Sequence Match ( AT2G20120.2 )
(BLAST)

001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL

Arabidopsis Description

COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.