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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, peroxisome, secretory
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d007647_P001
Zm00001d009211_P001
Zm00001d010055_P003
Zm00001d010806_P001
Zm00001d016021_P001
Zm00001d025321_P001
Zm00001d037747_P001
Zm00001d038756_P001
Zm00001d039455_P002
Zm00001d040278_P001
Zm00001d040752_P001
Zm00001d042866_P001
Zm00001d049068_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G20130.1 Zm00001d007647_P001 AT2G20130.1 21798944
AT2G20130.1 Zm00001d010806_P001 AT2G20130.1 21798944
AT2G20130.1 Zm00001d016021_P001 AT2G20130.1 21798944
AT2G20130.1 Zm00001d025321_P001 AT2G20130.1 21798944
AT2G20130.1 Zm00001d038756_P001 AT2G20130.1 21798944
AT2G20130.1 Zm00001d037747_P001 AT3G13710.1 21798944
AT2G20130.1 Zm00001d039455_P002 AT3G13710.1 21798944
AT2G20130.1 Zm00001d009211_P001 AT4G02080.1 21798944
AT2G20130.1 Zm00001d040278_P001 AT4G02080.1 21798944
AT2G20130.1 Zm00001d040752_P001 AT4G02080.1 21798944
AT2G20130.1 Zm00001d049068_P001 AT4G02080.1 21798944
AT2G20130.1 Zm00001d010055_P003 AT5G02040.1 21798944
AT2G20130.1 Zm00001d042866_P001 AT5G02040.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES19854 Sorghum cytosol, peroxisome, plasma membrane 99.27 99.27
Zm00001d010806_P001 Maize cytosol, peroxisome, plasma membrane 92.67 92.67
Os05t0529000-01 Rice cytosol, peroxisome, plasma membrane 86.81 86.81
TraesCS1B01G363400.1 Wheat golgi, peroxisome, vacuole 80.95 80.95
TraesCS1A01G348700.1 Wheat golgi, peroxisome, plasma membrane 84.62 80.77
TraesCS1D01G351700.1 Wheat golgi, peroxisome, plasma membrane 84.62 80.77
GSMUA_Achr6P22910_001 Banana plasma membrane 72.89 77.43
VIT_11s0016g03780.t01 Wine grape plasma membrane 75.09 77.07
PGSC0003DMT400000833 Potato endoplasmic reticulum, peroxisome, plasma membrane, plastid 72.16 76.95
Solyc12g007130.1.1 Tomato plasma membrane 71.43 76.17
KRH39309 Soybean cytosol, peroxisome, plasma membrane 72.89 75.09
KRH48364 Soybean cytosol, peroxisome, plasma membrane 72.89 75.09
GSMUA_Achr3P15700_001 Banana cytosol, peroxisome, plasma membrane 73.26 72.73
GSMUA_Achr8P27800_001 Banana cytosol, endoplasmic reticulum, nucleus 72.89 72.63
CDY50615 Canola plasma membrane 68.5 72.2
CDY69713 Canola plasma membrane 68.86 72.03
Bra015065.1-P Field mustard plasma membrane 69.23 71.86
CDY05723 Canola plasma membrane 67.77 70.61
CDX93027 Canola plasma membrane 69.23 70.52
Bra013250.1-P Field mustard plasma membrane 69.23 70.52
AT2G20120.1 Thale cress plasma membrane 69.23 70.52
AT2G20130.1 Thale cress plasma membrane 65.93 70.31
CDY46483 Canola plasma membrane 67.4 70.23
CDY31990 Canola plasma membrane 68.13 70.19
Bra041043.1-P Field mustard plasma membrane 68.13 70.19
HORVU1Hr1G081700.1 Barley mitochondrion 84.98 69.05
Zm00001d016021_P001 Maize plasma membrane 68.5 67.27
Zm00001d012269_P003 Maize endoplasmic reticulum, peroxisome, plastid, vacuole 55.68 59.14
Zm00001d023653_P001 Maize golgi, peroxisome, vacuole 59.34 58.27
Zm00001d010174_P004 Maize golgi, peroxisome, plastid, vacuole 51.65 53.61
Zm00001d042718_P001 Maize plastid 52.75 50.17
Zm00001d038319_P003 Maize plasma membrane 54.58 45.15
Zm00001d007647_P001 Maize mitochondrion 20.88 39.58
Zm00001d025321_P001 Maize mitochondrion 20.88 39.58
Protein Annotations
EMBL:BT033297EMBL:BT040662EMBL:BT087298EnsemblPlants:Zm00001d038756_P001EnsemblPlants:Zm00001d038756_T001EnsemblPlantsGene:Zm00001d038756
EntrezGene:100273275GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:DUF502PANTHER:PTHR31876
PANTHER:PTHR31876:SF1PFAM:PF04367ProteinID:AQK87738.1SEG:segTMHMM:TMhelixUniParc:UPI00017B6383
UniProt:B4F859MapMan:35.1::::
Description
Protein LIKE COV 1
Coordinates
chr6:+:163936343..163940582
Molecular Weight (calculated)
29876.2 Da
IEP (calculated)
8.212
GRAVY (calculated)
0.208
Length
273 amino acids
Sequence
(BLAST)
001: MGDNKSPLSL SPMGGRDRDR ELLIPVSGGG SAPGDGVEDG DRASSASAAL SSSGREAFHK VVRSWASKKF MTGCVILFPI AITFYITWWF IHFVDGFFSP
101: IYAQLGINIF GLGFVTSVTF IFLIGVFMSS WLGASVLSLG EWIIKRMPLV RHIYNASKQI SAAISPDQNK QAFKEVVIIR HPRVGEYAFG FITSSVSLQS
201: YSGQEDLYCV YVPTNHLYIG DIFMVNSKDV IRPNLSVREG IEIVVSGGMS MPQILSTLDP QMILGDRTGP SRS
Best Arabidopsis Sequence Match ( AT2G20120.2 )
(BLAST)
001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL
Arabidopsis Description
COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.