CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92955
KRG96730
KRH00054
KRH10001
KRH23330
KRH33832
KRH39309
KRH44167
KRH47141
KRH48364
KRH49188
KRH68446

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20130.1	KRH39309	AT2G20130.1	21798944
AT2G20130.1	KRH48364	AT2G20130.1	21798944
AT2G20130.1	KRH10001	AT3G13710.1	21798944
AT2G20130.1	KRH23330	AT3G13710.1	21798944
AT2G20130.1	KRH44167	AT3G13710.1	21798944
AT2G20130.1	KRH47141	AT3G13710.1	21798944
AT2G20130.1	KRG92955	AT4G02080.1	21798944
AT2G20130.1	KRG96730	AT4G02080.1	21798944
AT2G20130.1	KRH33832	AT4G02080.1	21798944
AT2G20130.1	KRH68446	AT4G02080.1	21798944
AT2G20130.1	KRH00054	AT5G02040.1	21798944
AT2G20130.1	KRH49188	AT5G02040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48364	Soybean	cytosol, peroxisome, plasma membrane	98.49	98.49
Solyc12g007130.1.1	Tomato	plasma membrane	80.75	83.59
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	80.75	83.59
VIT_11s0016g03780.t01	Wine grape	plasma membrane	81.51	81.2
CDY50615	Canola	plasma membrane	75.85	77.61
GSMUA_Achr6P22910_001	Banana	plasma membrane	73.96	76.26
AT2G20130.1	Thale cress	plasma membrane	73.21	75.78
Bra013250.1-P	Field mustard	plasma membrane	76.6	75.75
CDX93027	Canola	plasma membrane	76.6	75.75
Bra015065.1-P	Field mustard	plasma membrane	75.09	75.67
CDY69713	Canola	plasma membrane	74.34	75.48
CDY46483	Canola	plasma membrane	73.96	74.81
CDY05723	Canola	plasma membrane	72.08	72.9
Zm00001d038756_P001	Maize	cytosol, peroxisome, plasma membrane	75.09	72.89
EES19854	Sorghum	cytosol, peroxisome, plasma membrane	75.09	72.89
AT2G20120.1	Thale cress	plasma membrane	73.58	72.76
Os05t0529000-01	Rice	cytosol, peroxisome, plasma membrane	74.72	72.53
Bra041043.1-P	Field mustard	plasma membrane	72.45	72.45
CDY31990	Canola	plasma membrane	72.45	72.45
Zm00001d010806_P001	Maize	cytosol, peroxisome, plasma membrane	74.34	72.16
GSMUA_Achr10P...	Banana	plasma membrane	73.96	72.06
TraesCS1B01G363400.1	Wheat	golgi, peroxisome, vacuole	73.96	71.79
GSMUA_Achr8P27800_001	Banana	cytosol, endoplasmic reticulum, nucleus	73.21	70.8
GSMUA_Achr3P15700_001	Banana	cytosol, peroxisome, plasma membrane	72.08	69.45
TraesCS1A01G348700.1	Wheat	golgi, peroxisome, plasma membrane	72.45	67.13
TraesCS1D01G351700.1	Wheat	golgi, peroxisome, plasma membrane	72.45	67.13
KRH15223	Soybean	plastid	64.15	65.64
KRH53827	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	63.77	65.5
KRH64114	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	63.4	65.12
Os02t0269000-01	Rice	plasma membrane	70.94	64.6
Zm00001d016021_P001	Maize	plasma membrane	67.55	64.39
HORVU1Hr1G081700.1	Barley	mitochondrion	73.58	58.04
OQU84787	Sorghum	nucleus, peroxisome, plasma membrane	66.79	49.03
Zm00001d025321_P001	Maize	mitochondrion	20.0	36.81
Zm00001d007647_P001	Maize	mitochondrion	19.62	36.11

Protein Annotations

EntrezGene:100800188	MapMan:35.1	EMBL:ACUP02005930	InterPro:DUF502	EnsemblPlantsGene:GLYMA_09G192200	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0007275	GO:GO:0008150
GO:GO:0010222	GO:GO:0016020	GO:GO:0016021	UniProt:I1L4J9	EnsemblPlants:KRH39309	ProteinID:KRH39309
ProteinID:KRH39309.1	PFAM:PF04367	PANTHER:PTHR31876	PANTHER:PTHR31876:SF1	TMHMM:TMhelix	UniParc:UPI0002339007
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:41683659..41688027

Molecular Weight (calculated)

29523.9 Da

IEP (calculated)

8.459

GRAVY (calculated)

0.274

Length

265 amino acids

Sequence
(BLAST)

001: MSSMAITTRD RDRELLIPVA DIPAGDAAVS PSPKPSSSAS PPHHSGRETF YKVIRSWASK KFMTGCVILF PIAITFYITW WFIHFVDGFF SPIYAQLGID
101: IFGLGFITSI TFIFLVGVFM SSWLGASVLG LGEWFIKRMP LVRHIYNASK QISAAISPDQ NTQAFKEVAI IRHPRIGEYA FGFITSSVTL QNYSGDEELC
201: CVYVPTNHLY IGDIFLVNTK DVIRPNLSIR EGIEIVVSGG MSMPQILSTI DSRIRLGEIS RINRS

Best Arabidopsis Sequence Match ( AT2G20130.1 )
(BLAST)

001: MANRERDREL LIPVADFGDK DDGSSSKPSS SSSASSSHQS GHETLSLFIR GWASKKFMTG CVILLPIAVT FYTTWWFIHF VDGFFSPIYA LLGINIFGFG
101: FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT EEELCCVYVP
201: TNHLYIGDIL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTLDKPLA SIGNES

Arabidopsis Description

LCV1Protein LIKE COV 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY49]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.