CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92955
KRG96730
KRH00054
KRH10001
KRH23330
KRH33832
KRH39309
KRH44167
KRH47141
KRH48364
KRH49188
KRH68446

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20130.1	KRH39309	AT2G20130.1	21798944
AT2G20130.1	KRH48364	AT2G20130.1	21798944
AT2G20130.1	KRH10001	AT3G13710.1	21798944
AT2G20130.1	KRH23330	AT3G13710.1	21798944
AT2G20130.1	KRH44167	AT3G13710.1	21798944
AT2G20130.1	KRH47141	AT3G13710.1	21798944
AT2G20130.1	KRG92955	AT4G02080.1	21798944
AT2G20130.1	KRG96730	AT4G02080.1	21798944
AT2G20130.1	KRH33832	AT4G02080.1	21798944
AT2G20130.1	KRH68446	AT4G02080.1	21798944
AT2G20130.1	KRH00054	AT5G02040.1	21798944
AT2G20130.1	KRH49188	AT5G02040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39309	Soybean	cytosol, peroxisome, plasma membrane	98.49	98.49
Solyc12g007130.1.1	Tomato	plasma membrane	81.51	84.38
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	81.51	84.38
VIT_11s0016g03780.t01	Wine grape	plasma membrane	82.26	81.95
CDY50615	Canola	plasma membrane	75.85	77.61
Bra015065.1-P	Field mustard	plasma membrane	75.47	76.05
GSMUA_Achr6P22910_001	Banana	plasma membrane	73.58	75.88
CDY69713	Canola	plasma membrane	74.72	75.86
AT2G20130.1	Thale cress	plasma membrane	73.21	75.78
Bra013250.1-P	Field mustard	plasma membrane	76.6	75.75
CDX93027	Canola	plasma membrane	76.6	75.75
CDY46483	Canola	plasma membrane	74.34	75.19
CDY05723	Canola	plasma membrane	72.08	72.9
Zm00001d038756_P001	Maize	cytosol, peroxisome, plasma membrane	75.09	72.89
EES19854	Sorghum	cytosol, peroxisome, plasma membrane	75.09	72.89
AT2G20120.1	Thale cress	plasma membrane	73.58	72.76
Os05t0529000-01	Rice	cytosol, peroxisome, plasma membrane	74.72	72.53
Bra041043.1-P	Field mustard	plasma membrane	72.45	72.45
CDY31990	Canola	plasma membrane	72.45	72.45
GSMUA_Achr10P...	Banana	plasma membrane	74.34	72.43
Zm00001d010806_P001	Maize	cytosol, peroxisome, plasma membrane	74.34	72.16
TraesCS1B01G363400.1	Wheat	golgi, peroxisome, vacuole	74.34	72.16
GSMUA_Achr8P27800_001	Banana	cytosol, endoplasmic reticulum, nucleus	72.45	70.07
GSMUA_Achr3P15700_001	Banana	cytosol, peroxisome, plasma membrane	71.7	69.09
TraesCS1A01G348700.1	Wheat	golgi, peroxisome, plasma membrane	72.83	67.48
TraesCS1D01G351700.1	Wheat	golgi, peroxisome, plasma membrane	72.83	67.48
KRH53827	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	64.53	66.28
KRH64114	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	64.15	65.89
KRH15223	Soybean	plastid	64.15	65.64
Os02t0269000-01	Rice	plasma membrane	71.32	64.95
Zm00001d016021_P001	Maize	plasma membrane	67.92	64.75
HORVU1Hr1G081700.1	Barley	mitochondrion	73.96	58.33
OQU84787	Sorghum	nucleus, peroxisome, plasma membrane	67.17	49.31
Zm00001d025321_P001	Maize	mitochondrion	20.38	37.5
Zm00001d007647_P001	Maize	mitochondrion	20.0	36.81

Protein Annotations

EntrezGene:100305375	MapMan:35.1	EMBL:ACUP02004225	EMBL:BT088917	UniProt:C5WLV2	InterPro:DUF502
EnsemblPlantsGene:GLYMA_07G084700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0007275	GO:GO:0008150	GO:GO:0010222	GO:GO:0016020	GO:GO:0016021	EnsemblPlants:KRH48364
ProteinID:KRH48364	ProteinID:KRH48364.1	PFAM:PF04367	PANTHER:PTHR31876	PANTHER:PTHR31876:SF1	TMHMM:TMhelix
UniParc:UPI0001AE5017	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:7801384..7806205

Molecular Weight (calculated)

29471.7 Da

IEP (calculated)

8.459

GRAVY (calculated)

0.236

Length

265 amino acids

Sequence
(BLAST)

001: MSSMAITTRD RDRELLIPVA DTPAGDAAVS PSPKPSSSAS SPHHSGRETF YKVVRSWASK KFMTGCVILF PIAITFYITW WFIHFVDGFF SPIYAQLGID
101: IFGLGFITSI TFIFLVGVFM SSWLGASVLG LGEWFIKRMP LVRHIYNASK QISAAISPDQ NTQAFKEVAI IRHPRIGEYA FGFITSSVTL QNYSGDEELC
201: CVYVPTNHLY IGDIFLVNTK DVIRPNLSIR EGIEIVVSGG MSMPQILSTI DSRIRPGEIS RINRS

Best Arabidopsis Sequence Match ( AT2G20120.2 )
(BLAST)

001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL

Arabidopsis Description

COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.