Factsheet for Zm00001d007647_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007647_P001
Zm00001d009211_P001
Zm00001d010055_P003
Zm00001d010806_P001
Zm00001d016021_P001
Zm00001d025321_P001
Zm00001d037747_P001
Zm00001d038756_P001
Zm00001d039455_P002
Zm00001d040278_P001
Zm00001d040752_P001
Zm00001d042866_P001
Zm00001d049068_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20130.1	Zm00001d007647_P001	AT2G20130.1	21798944
AT2G20130.1	Zm00001d010806_P001	AT2G20130.1	21798944
AT2G20130.1	Zm00001d016021_P001	AT2G20130.1	21798944
AT2G20130.1	Zm00001d025321_P001	AT2G20130.1	21798944
AT2G20130.1	Zm00001d038756_P001	AT2G20130.1	21798944
AT2G20130.1	Zm00001d037747_P001	AT3G13710.1	21798944
AT2G20130.1	Zm00001d039455_P002	AT3G13710.1	21798944
AT2G20130.1	Zm00001d009211_P001	AT4G02080.1	21798944
AT2G20130.1	Zm00001d040278_P001	AT4G02080.1	21798944
AT2G20130.1	Zm00001d040752_P001	AT4G02080.1	21798944
AT2G20130.1	Zm00001d049068_P001	AT4G02080.1	21798944
AT2G20130.1	Zm00001d010055_P003	AT5G02040.1	21798944
AT2G20130.1	Zm00001d042866_P001	AT5G02040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025321_P001	Maize	mitochondrion	84.72	84.72
Zm00001d016021_P001	Maize	plasma membrane	75.0	38.85
Os02t0269000-01	Rice	plasma membrane	55.56	27.49
OQU84787	Sorghum	nucleus, peroxisome, plasma membrane	63.89	25.48
Zm00001d010806_P001	Maize	cytosol, peroxisome, plasma membrane	41.67	21.98
Bra015065.1-P	Field mustard	plasma membrane	39.58	21.67
CDY50615	Canola	plasma membrane	38.89	21.62
CDY46483	Canola	plasma membrane	38.89	21.37
GSMUA_Achr10P...	Banana	plasma membrane	40.28	21.32
CDY69713	Canola	plasma membrane	38.19	21.07
VIT_11s0016g03780.t01	Wine grape	plasma membrane	38.89	21.05
Zm00001d038756_P001	Maize	cytosol, peroxisome, plasma membrane	39.58	20.88
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	36.81	20.7
Solyc12g007130.1.1	Tomato	plasma membrane	36.11	20.31
CDX93027	Canola	plasma membrane	37.5	20.15
Bra013250.1-P	Field mustard	plasma membrane	37.5	20.15
AT2G20120.1	Thale cress	plasma membrane	37.5	20.15
CDY31990	Canola	plasma membrane	36.81	20.0
KRH48364	Soybean	cytosol, peroxisome, plasma membrane	36.81	20.0
Bra041043.1-P	Field mustard	plasma membrane	36.81	20.0
KRH39309	Soybean	cytosol, peroxisome, plasma membrane	36.11	19.62
AT2G20130.1	Thale cress	plasma membrane	34.72	19.53
CDY05723	Canola	plasma membrane	35.42	19.47
Zm00001d023653_P001	Maize	golgi, peroxisome, vacuole	36.11	18.7
Zm00001d010174_P004	Maize	golgi, peroxisome, plastid, vacuole	29.17	15.97
Zm00001d012269_P003	Maize	endoplasmic reticulum, peroxisome, plastid, vacuole	27.08	15.18
Zm00001d038319_P003	Maize	plasma membrane	29.17	12.73
Zm00001d042718_P001	Maize	plastid	22.22	11.15

Protein Annotations

EnsemblPlants:Zm00001d007647_P001	EnsemblPlants:Zm00001d007647_T001	EnsemblPlantsGene:Zm00001d007647	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31876	PANTHER:PTHR31876:SF7	ProteinID:ONM27280.1	TMHMM:TMhelix	UniParc:UPI0008DB346E	UniProt:A0A1D6F7S9
MapMan:35.1	:	:	:	:	:

Description

Protein LIKE COV 1

Coordinates

chr2:-:236838013..236840238

Molecular Weight (calculated)

15912.1 Da

IEP (calculated)

9.341

GRAVY (calculated)

0.067

Length

144 amino acids

Sequence
(BLAST)

001: MLTQVSNKKG GSCRPLQLRA SSRAREDIWM AMGDAKPLVL IPMPSRDRDL LVPTAAVATH ASPSARSVAD SDDDESKPSS ASAAAQTGRE AFHKVVHSWA
101: SKKFMTVCVI LFPIAVTFYV TWWFFRFVDG FFSPIYAHLN ACLF

Best Arabidopsis Sequence Match ( AT2G18460.1 )
(BLAST)

001: METRERDLER LIPMHKSGAS PRDVVLSVPP SPLASPIHVA GKEAIYKVIR SWASKKFMTG CVILLPIAVT FYFTWWFIHF VDGFFSPIYT HLGINMFGLG
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT

Arabidopsis Description

LCV3Protein LIKE COV 3 [Source:UniProtKB/Swiss-Prot;Acc:F4IQJ6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.