Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012269_P003 | Maize | endoplasmic reticulum, peroxisome, plastid, vacuole | 82.23 | 91.83 |
| EES03944 | Sorghum | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 82.23 | 91.47 |
| TraesCS3B01G412400.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 78.75 | 87.26 |
| TraesCS3A01G379800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 77.7 | 86.1 |
| TraesCS3D01G372800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 75.61 | 82.51 |
| GSMUA_Achr6P19630_001 | Banana | plasma membrane | 69.69 | 79.05 |
| GSMUA_Achr5P01100_001 | Banana | plasma membrane | 70.03 | 78.82 |
| VIT_07s0031g02010.t01 | Wine grape | plasma membrane | 66.2 | 74.51 |
| KRH64114 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 66.55 | 74.03 |
| KRH53827 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 66.2 | 73.64 |
| Zm00001d010174_P004 | Maize | golgi, peroxisome, plastid, vacuole | 66.2 | 72.24 |
| PGSC0003DMT400050735 | Potato | plasma membrane | 63.76 | 72.05 |
| Bra014012.1-P | Field mustard | peroxisome | 64.81 | 71.54 |
| CDY36014 | Canola | peroxisome | 64.81 | 71.54 |
| Solyc04g051340.2.1 | Tomato | plasma membrane | 63.07 | 71.26 |
| CDY47858 | Canola | peroxisome | 64.11 | 70.77 |
| AT1G43130.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 62.72 | 68.97 |
| Os01t0867900-02 | Rice | extracellular, plasma membrane | 68.99 | 68.51 |
| HORVU3Hr1G083110.1 | Barley | cytosol, peroxisome | 72.47 | 65.2 |
| Zm00001d038319_P003 | Maize | plasma membrane | 72.47 | 63.03 |
| Zm00001d010806_P001 | Maize | cytosol, peroxisome, plasma membrane | 50.17 | 52.75 |
| Zm00001d038756_P001 | Maize | cytosol, peroxisome, plasma membrane | 50.17 | 52.75 |
| Zm00001d016021_P001 | Maize | plasma membrane | 48.78 | 50.36 |
| Zm00001d023653_P001 | Maize | golgi, peroxisome, vacuole | 44.25 | 45.68 |
| Zm00001d007647_P001 | Maize | mitochondrion | 11.15 | 22.22 |
| Zm00001d025321_P001 | Maize | mitochondrion | 10.8 | 21.53 |
Protein Annotations
| EnsemblPlants:Zm00001d042718_P001 | EnsemblPlants:Zm00001d042718_T001 | EnsemblPlantsGene:Zm00001d042718 | EntrezGene:100193368 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF3 | PFAM:PF04367 | ProteinID:ONM36143.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000843A621 | UniProt:A0A1D6N6B6 | MapMan:35.1 | : |
Description
Protein LIKE COV 2
Coordinates
chr3:+:178114275..178120637
Molecular Weight (calculated)
31907.7 Da
IEP (calculated)
6.280
GRAVY (calculated)
0.245
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEKESTSI PLSQAAEAVD PEDPAKSPPR PSSPTTSTRK GLADRSTIRL VPPSGRILSG FRNVCQFDAS LEFIDFAVGS VVLFPVAVTF FITWWFIQFV
101: DGFFSPLYAK IGIDIFGLGF LTSMVFIFLV GIFVSSWVGS TIFWVGEWFI KKMPFVRHIY SASKQVSTAI SPDQNTTAFK EVAIIRHPRI GEYAFGFITS
201: TVVLQTDKGD EELCSVYVPT NHLYIGDIFL VNSEEIIRPN LSIREGIEII VSGGMTMPQV IASLEPMPRK SQNIRLNRMT SCIKQIA
101: DGFFSPLYAK IGIDIFGLGF LTSMVFIFLV GIFVSSWVGS TIFWVGEWFI KKMPFVRHIY SASKQVSTAI SPDQNTTAFK EVAIIRHPRI GEYAFGFITS
201: TVVLQTDKGD EELCSVYVPT NHLYIGDIFL VNSEEIIRPN LSIREGIEII VSGGMTMPQV IASLEPMPRK SQNIRLNRMT SCIKQIA
001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
Arabidopsis Description
LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.