Factsheet for Zm00001d038319_P003

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
ChloroP:	plastid
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18295	Sorghum	plasma membrane	75.15	93.58
Zm00001d012269_P003	Maize	endoplasmic reticulum, peroxisome, plastid, vacuole	66.36	85.21
TraesCS1D01G272500.1	Wheat	cytosol, plasma membrane, plastid, vacuole	65.15	82.69
TraesCS1B01G282400.1	Wheat	cytosol, plasma membrane, plastid, vacuole	65.15	82.69
Os05t0437200-01	Rice	cytosol, plasma membrane, vacuole	65.15	82.69
TraesCS1A01G272400.1	Wheat	cytosol, plasma membrane, plastid, vacuole	65.15	82.69
Zm00001d010174_P004	Maize	golgi, peroxisome, plastid, vacuole	65.76	82.51
GSMUA_Achr6P19630_001	Banana	plasma membrane	58.79	76.68
HORVU1Hr1G075030.4	Barley	cytosol, peroxisome, plasma membrane	66.36	76.31
GSMUA_Achr5P01100_001	Banana	plasma membrane	57.88	74.9
KRH64114	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	57.58	73.64
Bra014012.1-P	Field mustard	peroxisome	57.27	72.69
CDY36014	Canola	peroxisome	57.27	72.69
KRH53827	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	56.67	72.48
Zm00001d042718_P001	Maize	plastid	63.03	72.47
VIT_07s0031g02010.t01	Wine grape	plasma membrane	55.76	72.16
CDY47858	Canola	peroxisome	56.67	71.92
PGSC0003DMT400050735	Potato	plasma membrane	55.15	71.65
Solyc04g051340.2.1	Tomato	plasma membrane	54.55	70.87
AT1G43130.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane, plastid	55.15	69.73
Zm00001d038756_P001	Maize	cytosol, peroxisome, plasma membrane	45.15	54.58
Zm00001d010806_P001	Maize	cytosol, peroxisome, plasma membrane	44.85	54.21
Zm00001d016021_P001	Maize	plasma membrane	43.64	51.8
Zm00001d023653_P001	Maize	golgi, peroxisome, vacuole	39.39	46.76
Zm00001d007647_P001	Maize	mitochondrion	12.73	29.17
Zm00001d025321_P001	Maize	mitochondrion	12.73	29.17

Protein Annotations

EnsemblPlants:Zm00001d038319_P003	EnsemblPlants:Zm00001d038319_T003	EnsemblPlantsGene:Zm00001d038319	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF502	PANTHER:PTHR31876	PANTHER:PTHR31876:SF3	PFAM:PF04367	ProteinID:AQK86344.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0008426912	UniProt:A0A1D6M5H6	MapMan:35.1	:	:

Description

Protein LIKE COV 2

Coordinates

chr6:-:154339909..154352765

Molecular Weight (calculated)

36828.1 Da

IEP (calculated)

8.843

GRAVY (calculated)

0.295

Length

330 amino acids

Sequence
(BLAST)

001: MPEDKEYAPL PLGQAAAPDP EDPVKSPPRP SSPATSTRKA CFAVLQSWVS RKFMTGCVVL FPIAVTFFLT WWFIQFVDGF FSPLYAKLGF DMFGNCLCFI
101: CGLGFFTSLV FILLVGIFVS SWVGSTVFWV GEWFIKKMPF VRHIYSASKQ VSTAVSPDQN TTAFKEVAII SHPRVGEYAF GFITSTMVLQ TDKGDEELCS
201: VYVPTNHLYI GDIFLVNSTD IIRPNLSIRE GIDASLVTAS VDVGGYLRVG LPSLVMFHHK KPRQLNYAQC FLGPKLKQIH RRLIITLNIF SVVHATEIIV
301: SGGMTMPQVI TSLEPTPRKS HVRLDRVRTV

Best Arabidopsis Sequence Match ( AT1G43130.1 )
(BLAST)

001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L

Arabidopsis Description

LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.