Factsheet for Zm00001d016021_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007647_P001
Zm00001d009211_P001
Zm00001d010055_P003
Zm00001d010806_P001
Zm00001d016021_P001
Zm00001d025321_P001
Zm00001d037747_P001
Zm00001d038756_P001
Zm00001d039455_P002
Zm00001d040278_P001
Zm00001d040752_P001
Zm00001d042866_P001
Zm00001d049068_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20130.1	Zm00001d007647_P001	AT2G20130.1	21798944
AT2G20130.1	Zm00001d010806_P001	AT2G20130.1	21798944
AT2G20130.1	Zm00001d016021_P001	AT2G20130.1	21798944
AT2G20130.1	Zm00001d025321_P001	AT2G20130.1	21798944
AT2G20130.1	Zm00001d038756_P001	AT2G20130.1	21798944
AT2G20130.1	Zm00001d037747_P001	AT3G13710.1	21798944
AT2G20130.1	Zm00001d039455_P002	AT3G13710.1	21798944
AT2G20130.1	Zm00001d009211_P001	AT4G02080.1	21798944
AT2G20130.1	Zm00001d040278_P001	AT4G02080.1	21798944
AT2G20130.1	Zm00001d040752_P001	AT4G02080.1	21798944
AT2G20130.1	Zm00001d049068_P001	AT4G02080.1	21798944
AT2G20130.1	Zm00001d010055_P003	AT5G02040.1	21798944
AT2G20130.1	Zm00001d042866_P001	AT5G02040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0269000-01	Rice	plasma membrane	83.45	79.73
Zm00001d007647_P001	Maize	mitochondrion	38.85	75.0
Bra015065.1-P	Field mustard	plasma membrane	66.19	69.96
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	64.39	69.92
CDY69713	Canola	plasma membrane	65.47	69.73
VIT_11s0016g03780.t01	Wine grape	plasma membrane	66.55	69.55
CDY50615	Canola	plasma membrane	64.75	69.5
Zm00001d010806_P001	Maize	cytosol, peroxisome, plasma membrane	67.99	69.23
Solyc12g007130.1.1	Tomato	plasma membrane	63.67	69.14
CDY46483	Canola	plasma membrane	65.11	69.08
OQU84787	Sorghum	nucleus, peroxisome, plasma membrane	89.21	68.7
Zm00001d038756_P001	Maize	cytosol, peroxisome, plasma membrane	67.27	68.5
AT2G20130.1	Thale cress	plasma membrane	62.59	67.97
KRH48364	Soybean	cytosol, peroxisome, plasma membrane	64.75	67.92
GSMUA_Achr10P...	Banana	plasma membrane	66.19	67.65
KRH39309	Soybean	cytosol, peroxisome, plasma membrane	64.39	67.55
CDX93027	Canola	plasma membrane	64.75	67.16
Bra013250.1-P	Field mustard	plasma membrane	64.75	67.16
CDY31990	Canola	plasma membrane	63.31	66.42
Bra041043.1-P	Field mustard	plasma membrane	63.31	66.42
CDY05723	Canola	plasma membrane	62.59	66.41
AT2G20120.1	Thale cress	plasma membrane	62.95	65.3
Zm00001d025321_P001	Maize	mitochondrion	32.37	62.5
Zm00001d023653_P001	Maize	golgi, peroxisome, vacuole	58.63	58.63
Zm00001d012269_P003	Maize	endoplasmic reticulum, peroxisome, plastid, vacuole	53.24	57.59
Zm00001d010174_P004	Maize	golgi, peroxisome, plastid, vacuole	49.28	52.09
Zm00001d042718_P001	Maize	plastid	50.36	48.78
Zm00001d038319_P003	Maize	plasma membrane	51.8	43.64

Protein Annotations

EnsemblPlants:Zm00001d016021_P001	EnsemblPlants:Zm00001d016021_T001	EnsemblPlantsGene:Zm00001d016021	EntrezGene:103626947	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:DUF502	PANTHER:PTHR31876	PANTHER:PTHR31876:SF7	PFAM:PF04367	ProteinID:AQK69945.1
TMHMM:TMhelix	UniParc:UPI000220FD09	UniProt:A0A1D6H546	MapMan:35.1	:	:

Description

Protein LIKE COV 1

Coordinates

chr5:+:140067179..140072205

Molecular Weight (calculated)

30747.2 Da

IEP (calculated)

6.879

GRAVY (calculated)

0.286

Length

278 amino acids

Sequence
(BLAST)

001: MAMGDAKPLV LIPMPSCDRD LLVPTAAVAT YASPSARSVA DSDDDESKPS SASAAAQTGR EAFHKVVHSW ASKKFMTGCV ILFPIAVTFY VTWWFFRFVD
101: GFFSPIYAHL GIKIFGLGFV TSISFIFVVG VFMSSWLGAS VLGLGEWFIK RMPFVRHIYD ASKQISAAIS PDQNKHAFKE LVIIRHPRIG EYAFGFITSE
201: VLLQGYSGEE QMYCVYVPTN HLYIGDIFLV SSSDVIRPNM SVREGIEIVV SVGTSMPGVL SILETEPNQL DRMRSTRS

Best Arabidopsis Sequence Match ( AT2G20120.2 )
(BLAST)

001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL

Arabidopsis Description

COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.