CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00126
EES00709
EES02699
EES03880
EES15193
EES19854
KXG22142
KXG23692
KXG28257
OQU77594
OQU84787

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20130.1	EES19854	AT2G20130.1	21798944
AT2G20130.1	OQU84787	AT2G20130.1	21798944
AT2G20130.1	EES00126	AT3G13710.1	21798944
AT2G20130.1	OQU77594	AT3G13710.1	21798944
AT2G20130.1	EES00709	AT4G02080.1	21798944
AT2G20130.1	EES02699	AT4G02080.1	21798944
AT2G20130.1	EES15193	AT4G02080.1	21798944
AT2G20130.1	KXG23692	AT4G02080.1	21798944
AT2G20130.1	KXG28257	AT4G02080.1	21798944
AT2G20130.1	EES03880	AT5G02040.1	21798944
AT2G20130.1	KXG22142	AT5G02040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016021_P001	Maize	plasma membrane	68.7	89.21
Os02t0269000-01	Rice	plasma membrane	67.59	83.85
Zm00001d025321_P001	Maize	mitochondrion	30.19	75.69
CDY69713	Canola	plasma membrane	50.69	70.11
Bra015065.1-P	Field mustard	plasma membrane	50.97	69.96
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	49.31	69.53
CDY50615	Canola	plasma membrane	49.58	69.11
Solyc12g007130.1.1	Tomato	plasma membrane	48.75	68.75
CDY46483	Canola	plasma membrane	49.86	68.7
VIT_11s0016g03780.t01	Wine grape	plasma membrane	50.42	68.42
GSMUA_Achr10P...	Banana	plasma membrane	51.25	68.01
EES19854	Sorghum	cytosol, peroxisome, plasma membrane	51.25	67.77
Bra013250.1-P	Field mustard	plasma membrane	50.14	67.54
CDX93027	Canola	plasma membrane	50.14	67.54
KRH48364	Soybean	cytosol, peroxisome, plasma membrane	49.31	67.17
AT2G20130.1	Thale cress	plasma membrane	47.37	66.8
CDY05723	Canola	plasma membrane	48.48	66.79
KRH39309	Soybean	cytosol, peroxisome, plasma membrane	49.03	66.79
AT2G20120.1	Thale cress	plasma membrane	49.03	66.04
CDY31990	Canola	plasma membrane	48.2	65.66
Bra041043.1-P	Field mustard	plasma membrane	48.2	65.66
Zm00001d007647_P001	Maize	mitochondrion	25.48	63.89
EES15972	Sorghum	golgi, peroxisome, vacuole	44.04	56.99
EES03944	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	40.44	56.59
EES18295	Sorghum	plasma membrane	40.44	55.09

Protein Annotations

EnsemblPlants:OQU84787	EnsemblPlantsGene:SORBI_3004G122000	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:DUF502
PANTHER:PTHR31876	PANTHER:PTHR31876:SF7	PFAM:PF04367	ProteinID:OQU84787	ProteinID:OQU84787.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000B8BA27A	UniProt:A0A1Z5RM87	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr4:-:13423475..13431808

Molecular Weight (calculated)

40412.3 Da

IEP (calculated)

8.579

GRAVY (calculated)

-0.180

Length

361 amino acids

Sequence
(BLAST)

001: MKYVDSSQTY PNLRESTADS MCRRCAYSAV AQNHEHPKSP NKKPERERER GGSWSRPLQP PAESLEREGD LRMAMGDAKP SVLIPMPSRD RDRDRDRDRD
101: LLVPTAAVAT HASPSARAVA DSDDDESKPS SASAAAAAAQ TGREAFHKVV HSWASKKFMT GCVILFPIAV TFYVTWWFFR FVDGFFSPIY AHLGIKIFGL
201: GFVTSISFIF VVGVFMSSWL GASILGLGEW FIKRMPFVRH IYDASKQISA AISPDQNKHA FKEVVIIRHP RIGEYAFGFI TSEVLLQGYS SEEKMYCVYV
301: PTNHLYIGDI FLVSSSDVIR PNMSVREGIE IVVSVGTTMP QVLSILETEP NQLNRIRSTR S

Best Arabidopsis Sequence Match ( AT2G20130.1 )
(BLAST)

001: MANRERDREL LIPVADFGDK DDGSSSKPSS SSSASSSHQS GHETLSLFIR GWASKKFMTG CVILLPIAVT FYTTWWFIHF VDGFFSPIYA LLGINIFGFG
101: FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT EEELCCVYVP
201: TNHLYIGDIL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTLDKPLA SIGNES

Arabidopsis Description

LCV1Protein LIKE COV 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY49]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.