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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • cytosol 3
  • endoplasmic reticulum 6
  • extracellular 4
  • vacuole 3
  • plasma membrane 3
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:cytosol, secretory
BaCelLo:cytosol
EpiLoc:endoplasmic reticulum
MultiLoc:extracellular
Plant-mPloc:cytosol, endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
PPI

Inferred distinct locusB in Crop

locusBlocations
EER87703
EER89059
EER96209
EES00126
EES03822
EES03880
EES12769
EES15518
EES19854
KXG22142
KXG22202
KXG27287
KXG38626
OQU77594
OQU77712
OQU79263
OQU82692
OQU84787
OQU85574
OQU90261

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G09180.1 EER87703 AT4G25660.1 21798944
AT1G09180.1 EER87703 AT4G25680.1 21798944
AT1G09180.1 EES03822 AT5G01640.1 21798944
AT1G09180.1 EES15518 AT5G01640.1 21798944
AT1G09180.1 KXG22202 AT5G01640.1 21798944
AT1G09180.1 KXG38626 AT5G01640.1 21798944
AT1G09180.1 OQU79263 AT5G01640.1 21798944
AT1G09180.1 OQU82692 AT5G01640.1 21798944
AT1G09180.1 EES03880 AT5G02040.1 21798944
AT1G09180.1 KXG22142 AT5G02040.1 21798944
AT1G56330.1 EES19854 AT2G20130.1 21798944
AT1G56330.1 OQU84787 AT2G20130.1 21798944
AT1G56330.1 EES00126 AT3G13710.1 21798944
AT1G56330.1 OQU77594 AT3G13710.1 21798944
AT1G56330.1 EES00126 AT3G13720.1 21798944
AT1G56330.1 OQU77594 AT3G13720.1 21798944
AT1G56330.1 EER96209 AT3G43230.1 21798944
AT1G56330.1 OQU77712 AT3G43230.1 21798944
AT1G56330.1 OQU90261 AT3G43230.1 21798944
AT1G56330.1 EER89059 AT4G17720.1 21798944
AT1G56330.1 EES12769 AT4G17720.1 21798944
AT1G56330.1 OQU85574 AT4G17720.1 21798944
AT1G56330.1 EES03822 AT5G01640.1 21798944
AT1G56330.1 EES15518 AT5G01640.1 21798944
AT1G56330.1 KXG22202 AT5G01640.1 21798944
AT1G56330.1 KXG38626 AT5G01640.1 21798944
AT1G56330.1 OQU79263 AT5G01640.1 21798944
AT1G56330.1 OQU82692 AT5G01640.1 21798944
AT4G02080.1 KXG27287 AT1G22920.1 21798944
AT4G02080.1 KXG27287 AT1G71230.1 21798944
AT4G02080.1 EES00126 AT3G13720.1 21798944
AT4G02080.1 OQU77594 AT3G13720.1 21798944
AT4G02080.1 EER87703 AT4G25680.1 21798944
AT4G02080.1 EES03822 AT5G01640.1 21798944
AT4G02080.1 EES15518 AT5G01640.1 21798944
AT4G02080.1 KXG22202 AT5G01640.1 21798944
AT4G02080.1 KXG38626 AT5G01640.1 21798944
AT4G02080.1 OQU79263 AT5G01640.1 21798944
AT4G02080.1 OQU82692 AT5G01640.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os12t0560300-01 Rice plasma membrane 97.41 97.41
EES00709 Sorghum endoplasmic reticulum, extracellular 96.89 96.89
TraesCS5D01G101300.1 Wheat golgi 96.89 96.89
TraesCS5A01G089200.1 Wheat golgi 96.37 96.37
TraesCS5B01G095200.1 Wheat endoplasmic reticulum, extracellular 96.37 96.37
Solyc01g079540.2.1 Tomato plastid 93.78 93.78
PGSC0003DMT400023327 Potato endoplasmic reticulum, extracellular 93.78 93.78
CDY22027 Canola endoplasmic reticulum, extracellular 93.78 93.78
CDX90955 Canola endoplasmic reticulum, extracellular 93.78 93.78
AT4G02080.1 Thale cress endoplasmic reticulum 93.78 93.78
Bra000895.1-P Field mustard endoplasmic reticulum, extracellular 93.78 93.78
CDX91807 Canola endoplasmic reticulum, extracellular 93.26 93.26
EES02699 Sorghum endoplasmic reticulum, extracellular 93.26 93.26
KRH68446 Soybean endoplasmic reticulum 92.75 92.75
AT3G62560.1 Thale cress endoplasmic reticulum 92.75 92.75
Solyc06g009660.2.1 Tomato extracellular 92.75 92.75
KRG96730 Soybean endoplasmic reticulum 92.75 92.75
PGSC0003DMT400018800 Potato cytosol 92.75 92.75
VIT_07s0005g01330.t01 Wine grape endoplasmic reticulum, extracellular 92.75 92.75
VIT_05s0077g01230.t01 Wine grape endoplasmic reticulum, extracellular 92.75 92.75
Solyc01g100350.2.1 Tomato plastid 92.23 92.23
AT1G56330.1 Thale cress endoplasmic reticulum 92.23 92.23
PGSC0003DMT400007183 Potato endoplasmic reticulum, golgi 92.23 92.23
KRG92955 Soybean endoplasmic reticulum, extracellular 91.71 91.71
KRH50759 Soybean endoplasmic reticulum 91.71 91.71
KRH33832 Soybean endoplasmic reticulum 91.71 91.71
KRH02329 Soybean endoplasmic reticulum, extracellular 91.19 91.19
KRH50760 Soybean endoplasmic reticulum 91.19 91.19
CDY65544 Canola endoplasmic reticulum, extracellular 90.16 91.1
KRH02328 Soybean endoplasmic reticulum 90.67 90.67
CDY59269 Canola endoplasmic reticulum, extracellular 91.19 90.26
Bra027937.1-P Field mustard endoplasmic reticulum, extracellular 91.19 90.26
CDY41713 Canola endoplasmic reticulum, extracellular 91.19 90.26
Bra038169.1-P Field mustard endoplasmic reticulum, extracellular 90.67 89.74
CDY39001 Canola endoplasmic reticulum, extracellular 90.67 89.74
KRH37008 Soybean endoplasmic reticulum 89.64 89.64
KRH11980 Soybean endoplasmic reticulum, extracellular 89.64 89.64
Bra018576.1-P Field mustard endoplasmic reticulum, golgi 89.12 89.12
CDX95000 Canola endoplasmic reticulum, golgi 89.12 89.12
CDX93520 Canola endoplasmic reticulum, golgi 89.12 89.12
CDY31105 Canola endoplasmic reticulum, golgi 88.6 88.6
CDY32159 Canola endoplasmic reticulum, golgi 88.08 88.08
PGSC0003DMT400068658 Potato endoplasmic reticulum, extracellular 87.05 87.05
Solyc01g060130.2.1 Tomato endoplasmic reticulum, extracellular 86.53 86.53
AT1G09180.1 Thale cress extracellular 85.49 85.49
VIT_16s0013g00170.t01 Wine grape cytosol 47.15 84.26
AT1G02620.1 Thale cress endoplasmic reticulum 50.26 79.51
EES15193 Sorghum endoplasmic reticulum 79.27 78.46
KXG28257 Sorghum endoplasmic reticulum 78.76 78.35
VIT_05s0165g00230.t01 Wine grape cytosol 67.88 77.06
VIT_14s0060g01340.t01 Wine grape endoplasmic reticulum, extracellular 80.83 65.82
VIT_02s0033g01130.t01 Wine grape cytosol 44.04 47.75
Bra036294.1-P Field mustard endoplasmic reticulum 94.3 44.61
CDY07095 Canola endoplasmic reticulum 94.3 44.5
EER92687 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 32.12 33.7
EES05578 Sorghum cytosol 30.57 32.07
Protein Annotations
MapMan:22.4.2.1Gene3D:3.40.50.300EntrezGene:8155459UniProt:C6JS77ProteinID:EES20137.1GO:GO:0000166
GO:GO:0003674GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005794GO:GO:0006810GO:GO:0006886GO:GO:0008150
GO:GO:0015031GO:GO:0016192InterPro:IPR006687ProteinID:KXG18773.1EnsemblPlants:KXG23692ProteinID:KXG23692
ProteinID:KXG23692.1InterPro:P-loop_NTPasePFAM:PF00025PRINTS:PR00328PFscan:PS51422PANTHER:PTHR11711
PANTHER:PTHR11711:SF165SMART:SM00177SMART:SM00178EnsemblPlantsGene:SORBI_3008G128600SUPFAM:SSF52540unigene:Sbi.8190
InterPro:Small_GTP-bd_domInterPro:Small_GTPase_ARF/SARInterPro:Small_GTPase_SAR1TIGRFAMs:TIGR00231UniParc:UPI0001AFF781RefSeq:XP_002489085.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr8:-:55481164..55485537
Molecular Weight (calculated)
21985.5 Da
IEP (calculated)
6.959
GRAVY (calculated)
-0.160
Length
193 amino acids
Sequence
(BLAST)
001: MFLVDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQYPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDDSLA TVPFLILGNK IDIPYAASEE ELRYHMGLSN FTTGKGKVNL GESNVRPLEV FMCSVVRKMG YGDGFKWVSQ YIN
Best Arabidopsis Sequence Match ( AT4G02080.1 )
(BLAST)
001: MFMIDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA SVPFLILGNK IDIPYAASED ELRYHLGLSN FTTGKGKVNL TDSNVRPLEV FMCSIVRKMG YGEGFKWVSQ YIK
Arabidopsis Description
SAR1ASAR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5S8]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.