CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89408
EER95306
EES00126
OQU77594

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	EES00126	AT3G13710.1	21798944
AT3G43230.1	OQU77594	AT3G13710.1	21798944
AT3G43230.1	EER89408	AT4G33350.1	21798944
AT3G43230.1	EER95306	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019348_P001	Maize	cytosol	95.56	95.56
TraesCS3B01G106600.1	Wheat	cytosol	80.04	80.04
TraesCS3D01G091300.1	Wheat	cytosol	77.42	77.42
HORVU3Hr1G016350.1	Barley	cytosol	76.81	77.28
Os07t0272400-01	Rice	cytosol	77.42	77.26
TraesCS3A01G091400.1	Wheat	cytosol	76.21	76.52
OQU77712	Sorghum	cytosol	48.79	75.16
GSMUA_Achr3P10170_001	Banana	mitochondrion	62.1	72.99
VIT_11s0016g00400.t01	Wine grape	cytosol	62.3	65.05
KRH02544	Soybean	cytosol	60.48	61.98
KRH19396	Soybean	cytosol	60.28	61.78
AT3G43230.1	Thale cress	cytosol	60.08	61.44
Solyc07g017500.2.1	Tomato	cytosol	59.48	60.82
OQU90261	Sorghum	cytosol	56.05	60.3
PGSC0003DMT400041172	Potato	cytosol	5.65	52.83
CDY30955	Canola	cytosol	56.05	48.69
CDY44837	Canola	cytosol	56.25	46.66
Bra019445.1-P	Field mustard	cytosol	55.85	43.28
EES04807	Sorghum	cytosol	40.93	38.16
EER89914	Sorghum	cytosol	38.51	35.77

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:8084602	UniProt:C5X3I0	EnsemblPlants:EER96209	ProteinID:EER96209
ProteinID:EER96209.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0032587
GO:GO:0035091	GO:GO:0046872	GO:GO:1900027	InterPro:IPR013083	InterPro:IPR017455	PFAM:PF01363
PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25	SMART:SM00064	EnsemblPlantsGene:SORBI_3002G104100
SUPFAM:SSF57903	unigene:Sbi.2346	UniParc:UPI0001A83AFB	RefSeq:XP_002459688.1	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:12278449..12282006

Molecular Weight (calculated)

53389.3 Da

IEP (calculated)

6.417

GRAVY (calculated)

-0.121

Length

496 amino acids

Sequence
(BLAST)

001: MSTRREIVSY HPLPAPGVTN SLKDEIQSKV TETVSNAINS FDPNALPRHI EGALGTAGNL INSFEPKWSG KKEFDFNGEA DFLDGYQCPD EYWGSAPVKV
101: QKPVNIKNLL GGVIAIIGRN LGNTEVEQPK DTKTSVSFLG SSDDGNTFLH SSVYMPSAPP VLDEEALNYN IYRAVLEAEP PEWLPDSYAS ACMQCAAPFT
201: ALTRGRHHCR FCGGIFCRAC SKGRSLLPAK FRERNPQRVC DACYDRLDPL QNLLINSVSN ASQTAKHDVM DWTCARGWLN LPIGLTMEHE IYKAANTLSS
301: YSQVARINPE KSIPHAVLSG ASGLAILTVA KAGAILTYKL GTGLVVARRS DGSWSAPSAI VSAGFGWGAQ VGGELMDFII VLRGPEAVQT FCSRMHFSLG
401: AGVSAAAGPV GRVLEADLRA GDKGSGVCYT YSCSKGAFIG VSLEGNLVAT RMDANLRFYG DPYLTTSDIL TGNVERPNAA KFLYTALDDL YSGLDC

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.