Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G091300.1 | Wheat | cytosol | 93.95 | 93.95 |
| TraesCS3A01G091400.1 | Wheat | cytosol | 91.53 | 91.9 |
| HORVU3Hr1G016350.1 | Barley | cytosol | 89.52 | 90.06 |
| EER96209 | Sorghum | cytosol | 80.04 | 80.04 |
| Zm00001d019348_P001 | Maize | cytosol | 79.64 | 79.64 |
| Os07t0272400-01 | Rice | cytosol | 76.41 | 76.26 |
| GSMUA_Achr3P10170_001 | Banana | mitochondrion | 60.08 | 70.62 |
| OQU77712 | Sorghum | cytosol | 41.73 | 64.29 |
| TraesCS2B01G194100.1 | Wheat | cytosol | 58.06 | 62.47 |
| VIT_11s0016g00400.t01 | Wine grape | cytosol | 58.67 | 61.26 |
| KRH19396 | Soybean | cytosol | 59.07 | 60.54 |
| KRH02544 | Soybean | cytosol | 58.87 | 60.33 |
| Solyc07g017500.2.1 | Tomato | cytosol | 57.86 | 59.18 |
| AT3G43230.1 | Thale cress | cytosol | 57.06 | 58.35 |
| PGSC0003DMT400041172 | Potato | cytosol | 5.24 | 49.06 |
| CDY30955 | Canola | cytosol | 54.23 | 47.11 |
| CDY44837 | Canola | cytosol | 54.64 | 45.32 |
| Bra019445.1-P | Field mustard | cytosol | 54.23 | 42.03 |
| TraesCS7B01G272800.1 | Wheat | cytosol | 39.92 | 37.57 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G106600.1 | EnsemblPlantsGene:TraesCS3B01G106600 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR013083 | InterPro:IPR017455 | InterPro:Ysc84_actin-binding | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR15629 | PANTHER:PTHR15629:SF25 | PFAM:PF01363 | PFAM:PF04366 | PFscan:PS50178 |
| SEG:seg | SMART:SM00064 | SUPFAM:SSF57903 | TIGR:cd11526 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr3B:-:72314475..72317328
Molecular Weight (calculated)
53568.6 Da
IEP (calculated)
6.371
GRAVY (calculated)
-0.152
Length
496 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTSSEVPFY HSLPVPGAED SLKDQIHSKV MGTIGNVMNS IDRKALPQQL EGAWETAGNV VNSLESKLSG QKSFDFDGGN DFLDGYECPD DYWDYEPHKA
101: QKPVNIRNLL GGIVAIIGRS CKNDEIQQSK EAKTSVSFLG SSIDGDTSLH LSVYAPSAPP LLDEEALSYN IYRVVLEAEP PEWLPDSYAD SCMQCSASFT
201: AITRGRHHCR FCGGIFCKAC SKGRCLLPAK FRERNPQRVC DACYDRLDPL QNLLINSVSN ATQTAKHDVM DWTSARGWLN LPIGLTLEHE IYKAAVSIRS
301: YSQVSRINPG KSIPHAVLSG ASGLAILTVV KAGAFLTYKL GTGLVVARRS DGSWSPPSAI ASAGLGWGAQ LGGELMDFII VLHGPEAVKT FSSRMHFSLG
401: AGLSAAAGPV GRVLEADVRA GNKGSGVCYT YSHSKGAFIG VSLEGNIVTT RMDANLRFYG DPYLTTSDIL MGNLEQPNAA KFLYQALDDL YSGLDC
101: QKPVNIRNLL GGIVAIIGRS CKNDEIQQSK EAKTSVSFLG SSIDGDTSLH LSVYAPSAPP LLDEEALSYN IYRVVLEAEP PEWLPDSYAD SCMQCSASFT
201: AITRGRHHCR FCGGIFCKAC SKGRCLLPAK FRERNPQRVC DACYDRLDPL QNLLINSVSN ATQTAKHDVM DWTSARGWLN LPIGLTLEHE IYKAAVSIRS
301: YSQVSRINPG KSIPHAVLSG ASGLAILTVV KAGAFLTYKL GTGLVVARRS DGSWSPPSAI ASAGLGWGAQ LGGELMDFII VLHGPEAVKT FSSRMHFSLG
401: AGLSAAAGPV GRVLEADVRA GNKGSGVCYT YSHSKGAFIG VSLEGNIVTT RMDANLRFYG DPYLTTSDIL MGNLEQPNAA KFLYQALDDL YSGLDC
001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP
Arabidopsis Description
RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.