Factsheet for TraesCS4D01G254500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, vacuole

Predictor Summary:

mitochondrion 3
nucleus 1
plastid 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G177600.1
TraesCS1B01G202600.1
TraesCS1D01G176100.1
TraesCS2A01G430400.1
TraesCS2B01G451000.1
TraesCS2D01G428000.1
TraesCS6A01G115700.1
TraesCS6B01G143500.1
TraesCS6D01G104500.1
TraesCS7A01G418100.1
TraesCS7B01G318200.1
TraesCS7D01G411100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33920.1	TraesCS2A01G430400.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS2B01G451000.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS2D01G428000.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS6A01G115700.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS6B01G143500.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS6D01G104500.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS7A01G418100.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS7B01G318200.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS7D01G411100.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS1A01G177600.1	AT4G39050.1	21798944
AT4G33920.1	TraesCS1B01G202600.1	AT4G39050.1	21798944
AT4G33920.1	TraesCS1D01G176100.1	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G254700.1	Wheat	plastid	98.2	89.67
TraesCS4A01G050000.1	Wheat	plastid	97.17	88.32
HORVU4Hr1G069380.3	Barley	peroxisome	48.07	78.24
Os03t0207400-01	Rice	mitochondrion	75.58	75.0
EER95306	Sorghum	mitochondrion	74.55	73.98
Zm00001d048131_P001	Maize	cytosol	73.26	72.89
KRG91074	Soybean	cytosol, mitochondrion	56.3	58.71
VIT_03s0091g00470.t01	Wine grape	mitochondrion	57.07	58.27
KRH35699	Soybean	mitochondrion	56.3	57.94
Solyc01g107300.2.1	Tomato	cytosol	33.93	57.64
PGSC0003DMT400013942	Potato	cytosol, mitochondrion	54.76	57.41
Solyc10g049630.1.1	Tomato	mitochondrion, nucleus	55.27	56.58
VIT_07s0129g00520.t01	Wine grape	cytosol	55.78	56.51
KRH28403	Soybean	cytosol	53.98	56.0
Bra036972.1-P	Field mustard	mitochondrion	53.73	55.88
KRH77072	Soybean	cytosol	53.98	55.7
TraesCS5D01G085200.1	Wheat	mitochondrion	54.76	55.61
Solyc02g092750.2.1	Tomato	cytosol	52.19	55.46
CDX72438	Canola	mitochondrion	53.21	55.35
CDY49385	Canola	mitochondrion	53.21	55.35
PGSC0003DMT400066175	Potato	cytosol	53.21	55.2
PGSC0003DMT400064207	Potato	cytosol	52.7	55.11
CDY28332	Canola	mitochondrion	54.24	54.95
Bra034592.1-P	Field mustard	mitochondrion	54.24	54.81
CDY51944	Canola	mitochondrion	54.24	54.81
VIT_18s0001g09390.t01	Wine grape	mitochondrion	52.44	53.97
TraesCS5D01G408500.1	Wheat	mitochondrion	51.41	53.76
AT4G33920.1	Thale cress	mitochondrion	52.44	53.68
Solyc01g107310.2.1	Tomato	mitochondrion	22.88	48.11
TraesCS1D01G208600.1	Wheat	cytosol, peroxisome, plastid	44.99	44.64
TraesCS2D01G456600.2	Wheat	mitochondrion	44.73	44.62
TraesCS3D01G544100.1	Wheat	mitochondrion	42.67	43.01
TraesCS7D01G524700.1	Wheat	mitochondrion	43.19	42.86
TraesCS5D01G510100.1	Wheat	plastid	42.16	42.6
TraesCS4D01G331100.1	Wheat	mitochondrion	42.93	41.85
TraesCS2D01G288400.1	Wheat	nucleus	25.19	17.98
TraesCS6D01G251300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	25.19	16.42
TraesCS5D01G493200.1	Wheat	mitochondrion, plastid	25.19	15.36
TraesCS4D01G357800.1	Wheat	cytosol, nucleus, peroxisome	22.88	14.71

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.4	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	InterPro:IPR001932	InterPro:IPR036457
PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032
PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF361	SMART:SM00331	SMART:SM00332	SUPFAM:SSF81606
EnsemblPlantsGene:TraesCS4D01G254500	EnsemblPlants:TraesCS4D01G254500.1	TIGR:cd00143	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:-:423428684..423429930

Molecular Weight (calculated)

41549.6 Da

IEP (calculated)

8.337

GRAVY (calculated)

-0.165

Length

389 amino acids

Sequence
(BLAST)

001: MRGSRWCCCC FGRGGGGAGR SGSVGDDGLV WDVGLKAHAS GEYSVAVAQA NEALEDQAQV LVSPAATLVG VYDGHGGPDA ARFVNARLFS LIQEFASQSG
101: GISAQVIKRA FGATEEAFMG MVEKSWPSQP RLMSVGSCCL VGAIEGGTLH VANLGDSRAV LGRLASTGGK KRRAVVAERL SRDHNVADEE VRREVAEAHP
201: DDPHIVMSSH GVWRIKGIIQ VSRSIGDAYL KRPDLCSPAV MQSLCPFPLR RPVMSAVPSV TSRRLRPGDQ FIIFASDGLW EQLSDEAAVG IVSRSPRKGV
301: AMRLVRAAQL EAARKKDIKY ESIAAIEKGR RRRFHDDITV VVLFLDSRCE GTPQPTAGAG GIDGTRAPVD VFSLGPDDHG DDPTRPVLR

Best Arabidopsis Sequence Match ( AT3G51370.1 )
(BLAST)

001: MLSTLMKLLS ACLWPSSSSG KSSDSTGKQD GLLWYKDFGQ HLVGEFSMAV VQANNLLEDQ SQVESGPLST LDSGPYGTFI GIYDGHGGPE TSRFVNDHLF
101: QHLKRFAAEQ ASMSVDVIKK AYEATEEGFL GVVTKQWPTK PQIAAVGSCC LVGVICGGML YIANVGDSRA VLGRAMKATG EVIALQLSAE HNVSIESVRQ
201: EMHSLHPDDS HIVMLKHNVW RVKGLIQISR SIGDVYLKKA EFNKEPLYTK YRIREPFKRP ILSGEPTITE HEIQPQDKFL IFASDGLWEQ MSNQEAVDIV
301: QNHPRNGIAR RLVKMALQEA AKKREMRYSD LKKIERGVRR HFHDDITVVI IFLDTNQVSS VKGPPLSIRG GGMTFPKKI

Arabidopsis Description

Probable protein phosphatase 2C 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD12]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.