Factsheet for Solyc01g107310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g110190.2.1
Solyc10g054080.1.1
Solyc11g044880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33920.1	Solyc01g110190.2.1	AT4G39050.1	21798944
AT4G33920.1	Solyc10g054080.1.1	AT4G39050.1	21798944
AT4G33920.1	Solyc11g044880.1.1	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066175	Potato	cytosol	90.27	44.53
Solyc10g049630.1.1	Tomato	mitochondrion, nucleus	71.89	35.0
GSMUA_Achr6P11170_001	Banana	cytosol	63.24	31.12
AT4G33920.1	Thale cress	mitochondrion	62.16	30.26
GSMUA_Achr2P21550_001	Banana	mitochondrion	61.62	29.53
GSMUA_Achr3P02220_001	Banana	mitochondrion	60.0	29.52
Bra036972.1-P	Field mustard	mitochondrion	59.46	29.41
CDY49385	Canola	mitochondrion	59.46	29.41
Solyc02g092750.2.1	Tomato	cytosol	57.84	29.23
CDX72438	Canola	mitochondrion	58.92	29.14
Bra034592.1-P	Field mustard	mitochondrion	60.54	29.09
GSMUA_Achr4P14220_001	Banana	mitochondrion	58.38	28.95
CDY28332	Canola	mitochondrion	60.0	28.91
CDY51944	Canola	mitochondrion	60.0	28.83
Os12t0580900-01	Rice	mitochondrion	61.08	28.83
TraesCS5D01G085200.1	Wheat	mitochondrion	57.3	27.68
HORVU5Hr1G018930.2	Barley	mitochondrion	57.3	27.68
TraesCS5B01G078500.1	Wheat	mitochondrion	56.76	27.42
TraesCS5A01G072500.1	Wheat	mitochondrion	55.68	26.89
Solyc10g055650.1.1	Tomato	cytosol	46.49	25.37
Solyc05g055980.2.1	Tomato	cytosol	42.7	25.16
Zm00001d048131_P001	Maize	cytosol	51.35	24.3
EER95306	Sorghum	mitochondrion	50.27	23.72
Os03t0207400-01	Rice	mitochondrion	49.73	23.47
HORVU4Hr1G069380.3	Barley	peroxisome	29.73	23.01
TraesCS4D01G254500.1	Wheat	mitochondrion, nucleus, plastid, vacuole	48.11	22.88
Solyc03g033340.2.1	Tomato	mitochondrion	47.57	22.17
Solyc09g007080.2.1	Tomato	cytosol	44.86	21.96
Solyc01g111730.2.1	Tomato	cytosol, mitochondrion, plastid	45.95	21.91
Solyc10g084410.1.1	Tomato	mitochondrion	44.32	21.81
Solyc02g083420.2.1	Tomato	mitochondrion	44.32	21.03
TraesCS4B01G254700.1	Wheat	plastid	48.11	20.89
TraesCS4A01G050000.1	Wheat	plastid	47.57	20.56
Solyc06g065920.2.1	Tomato	nucleus	37.84	18.72
Solyc10g078820.1.1	Tomato	mitochondrion	41.62	16.74
Solyc10g078810.1.1	Tomato	cytosol	37.3	15.75
Solyc01g066870.2.1	Tomato	cytosol, nucleus, peroxisome	23.78	13.88
Solyc10g086490.1.1	Tomato	cytosol	24.32	7.55
Solyc12g099600.1.1	Tomato	plasma membrane	23.24	7.48
Solyc01g107300.2.1	Tomato	cytosol	9.19	7.42
Solyc09g010780.2.1	Tomato	cytosol	23.24	6.9
Solyc06g076100.2.1	Tomato	nucleus	25.41	6.64
Solyc08g007000.2.1	Tomato	nucleus	27.03	6.4
Solyc08g077150.2.1	Tomato	nucleus	26.49	6.16
Solyc10g078800.1.1	Tomato	mitochondrion	35.68	5.03

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.4	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	UniProt:K4B2U8	PFAM:PF00481
InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF362
SUPFAM:SSF81606	EnsemblPlantsGene:Solyc01g107310.2	EnsemblPlants:Solyc01g107310.2.1	UniParc:UPI0002767C7D	:	:

Description

No Description!

Coordinates

chr1:+:94889294..94892499

Molecular Weight (calculated)

21266.6 Da

IEP (calculated)

9.371

GRAVY (calculated)

-0.265

Length

185 amino acids

Sequence
(BLAST)

001: MALGSCDGYL TIRRRFCMFS VSRSIGDAYL KKPEFNRDPI FQRYGNFVPL KRPVLTAEPS IVTRSIRPHD LFLIFASDGL WEQLSDQSAV EMVFKNPRAG
101: IAKRLVRAAL QEAAKKREMR YKDILKIEKG IRRYFHDDIT VIVIYLDHQK ESFHSKGTLG SITAPVDIFS FNSDDAEENQ VIEAF

Best Arabidopsis Sequence Match ( AT4G33920.1 )
(BLAST)

001: MLRALARPLE RCLGSRASGD GLLWQSELRP HAGGDYSIAV VQANSRLEDQ SQVFTSSSAT YVGVYDGHGG PEASRFVNRH LFPYMHKFAR EHGGLSVDVI
101: KKAFKETEEE FCGMVKRSLP MKPQMATVGS CCLVGAISND TLYVANLGDS RAVLGSVVSG VDSNKGAVAE RLSTDHNVAV EEVRKEVKAL NPDDSQIVLY
201: TRGVWRIKGI IQVSRSIGDV YLKKPEYYRD PIFQRHGNPI PLRRPAMTAE PSIIVRKLKP QDLFLIFASD GLWEHLSDET AVEIVLKHPR TGIARRLVRA
301: ALEEAAKKRE MRYGDIKKIA KGIRRHFHDD ISVIVVYLDQ NKTSSSNSKL VKQGGITAPP DIYSLHSDEA EQRRLLNVLY

Arabidopsis Description

Probable protein phosphatase 2C 63 [Source:UniProtKB/Swiss-Prot;Acc:O81760]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.