Factsheet for PGSC0003DMT400066175

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008772

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33920.1	PGSC0003DMT400008772	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107300.2.1	Tomato	cytosol	56.27	92.14
Solyc01g107310.2.1	Tomato	mitochondrion	44.53	90.27
PGSC0003DMT400013942	Potato	cytosol, mitochondrion	82.13	83.02
GSMUA_Achr6P11170_001	Banana	cytosol	71.73	71.54
AT4G33920.1	Thale cress	mitochondrion	70.13	69.21
GSMUA_Achr3P02220_001	Banana	mitochondrion	68.53	68.35
CDX72438	Canola	mitochondrion	68.0	68.18
Bra034592.1-P	Field mustard	mitochondrion	69.87	68.05
CDY28332	Canola	mitochondrion	69.6	67.97
Bra036972.1-P	Field mustard	mitochondrion	67.73	67.91
CDY51944	Canola	mitochondrion	69.6	67.79
CDY49385	Canola	mitochondrion	67.2	67.38
GSMUA_Achr4P14220_001	Banana	mitochondrion	66.67	67.02
PGSC0003DMT400064207	Potato	cytosol	66.4	66.94
GSMUA_Achr2P21550_001	Banana	mitochondrion	68.53	66.58
HORVU5Hr1G018930.2	Barley	mitochondrion	66.13	64.75
Os12t0580900-01	Rice	mitochondrion	67.47	64.54
TraesCS5D01G085200.1	Wheat	mitochondrion	65.87	64.49
TraesCS5B01G078500.1	Wheat	mitochondrion	65.07	63.71
TraesCS5A01G072500.1	Wheat	mitochondrion	64.8	63.45
Zm00001d048131_P001	Maize	cytosol	58.13	55.75
EER95306	Sorghum	mitochondrion	58.13	55.61
Os03t0207400-01	Rice	mitochondrion	56.0	53.57
TraesCS4D01G254500.1	Wheat	mitochondrion, nucleus, plastid, vacuole	55.2	53.21
PGSC0003DMT400068706	Potato	mitochondrion	52.0	50.91
PGSC0003DMT400028715	Potato	cytosol	50.4	50.27
HORVU4Hr1G069380.3	Barley	peroxisome	32.0	50.21
PGSC0003DMT400046486	Potato	mitochondrion	51.73	50.0
PGSC0003DMT400060005	Potato	cytosol	51.2	50.0
PGSC0003DMT400009248	Potato	mitochondrion	52.0	50.0
PGSC0003DMT400005115	Potato	cytosol	49.6	49.21
TraesCS4A01G050000.1	Wheat	plastid	56.0	49.07
TraesCS4B01G254700.1	Wheat	plastid	55.73	49.06
PGSC0003DMT400058098	Potato	mitochondrion	51.2	48.36
PGSC0003DMT400067223	Potato	mitochondrion	47.47	47.59
PGSC0003DMT400029771	Potato	cytosol, mitochondrion, peroxisome	44.27	43.01
PGSC0003DMT400029763	Potato	cytosol, mitochondrion	42.93	41.28
PGSC0003DMT400029765	Potato	mitochondrion	43.47	39.85
PGSC0003DMT400029770	Potato	mitochondrion	38.4	33.8
PGSC0003DMT400029776	Potato	cytosol	14.13	28.8
PGSC0003DMT400011807	Potato	nucleus	25.6	19.35
PGSC0003DMT400029441	Potato	cytosol, nucleus, peroxisome	26.13	18.81
PGSC0003DMT400049278	Potato	cytosol, nucleus, peroxisome	27.2	17.0
PGSC0003DMT400078173	Potato	nucleus	30.4	16.01
PGSC0003DMT400022788	Potato	cytosol, nucleus, peroxisome	26.93	16.01
PGSC0003DMT400052881	Potato	nucleus	28.8	13.83
PGSC0003DMT400045127	Potato	nucleus	29.33	13.78
PGSC0003DMT400022786	Potato	cytosol, nucleus, peroxisome	8.27	9.12

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.4	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	GO:GO:0046872
InterPro:IPR001932	InterPro:IPR036457	UniProt:M1CF51	PFAM:PF00481	EnsemblPlantsGene:PGSC0003DMG400025756	PGSC:PGSC0003DMG400025756
EnsemblPlants:PGSC0003DMT400066175	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032
PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF362	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000294A5B5

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG400025756]

Coordinates

chr1:+:83785407..83788710

Molecular Weight (calculated)

42199.4 Da

IEP (calculated)

7.625

GRAVY (calculated)

-0.258

Length

375 amino acids

Sequence
(BLAST)

001: MMRSCCRPLE RCFGRLNGDG LLWHMDLKPH ASGDFSIAVV QANSSLEDQS QVFTSPSATY VGVYDGHGGP EASRFVNRHL FSYLHKFSKE QGGLSSDVIK
101: RAFHATEEDF IQLVKRSLPV MPKIASVGSC CLVGAISEGE LYVANLGDSR AVLGRRGFDA EKNSVVAERL STDHNVSCEE VRKEVESLHP DDQDVVVYIR
201: GVWRIKGIIQ VSRSIGDAYL KKLEFNRDPI FQRYGNLVPL KRPVLTAEPS IVTRSIRPHD LFLIFASDGL WEQLSDQLAV EIVFKNPRAG IAKRLVRAAL
301: QEAAKKREMR YRDIQKIEKG IRRYFHDDIT VIVIYLDHQK ESFHSKGTLG SITAPVDIFS FNSNDAEENQ VIEAF

Best Arabidopsis Sequence Match ( AT4G33920.1 )
(BLAST)

001: MLRALARPLE RCLGSRASGD GLLWQSELRP HAGGDYSIAV VQANSRLEDQ SQVFTSSSAT YVGVYDGHGG PEASRFVNRH LFPYMHKFAR EHGGLSVDVI
101: KKAFKETEEE FCGMVKRSLP MKPQMATVGS CCLVGAISND TLYVANLGDS RAVLGSVVSG VDSNKGAVAE RLSTDHNVAV EEVRKEVKAL NPDDSQIVLY
201: TRGVWRIKGI IQVSRSIGDV YLKKPEYYRD PIFQRHGNPI PLRRPAMTAE PSIIVRKLKP QDLFLIFASD GLWEHLSDET AVEIVLKHPR TGIARRLVRA
301: ALEEAAKKRE MRYGDIKKIA KGIRRHFHDD ISVIVVYLDQ NKTSSSNSKL VKQGGITAPP DIYSLHSDEA EQRRLLNVLY

Arabidopsis Description

Probable protein phosphatase 2C 63 [Source:UniProtKB/Swiss-Prot;Acc:O81760]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.