Factsheet for PGSC0003DMT400022786

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

plastid 2
peroxisome 1
extracellular 1
cytosol 2
plasma membrane 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022788	Potato	cytosol, nucleus, peroxisome	95.0	51.19
Solyc09g010780.2.1	Tomato	cytosol	86.18	47.03
PGSC0003DMT400049278	Potato	cytosol, nucleus, peroxisome	61.76	35.0
GSMUA_Achr5P29080_001	Banana	mitochondrion	41.18	24.26
PGSC0003DMT400078173	Potato	nucleus	49.12	23.46
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus, peroxisome	38.53	22.47
GSMUA_Achr2P16350_001	Banana	mitochondrion	36.76	22.44
GSMUA_Achr10P...	Banana	mitochondrion, nucleus, plastid	40.0	22.33
CDY62569	Canola	nucleus	38.82	21.5
GSMUA_Achr9P03940_001	Banana	cytosol, nucleus, peroxisome	36.18	21.43
Zm00001d034655_P001	Maize	peroxisome	37.35	20.65
TraesCS5B01G492700.1	Wheat	mitochondrion, plastid	36.76	19.94
AT5G02400.1	Thale cress	nucleus	39.41	19.88
CDY44706	Canola	nucleus	34.12	19.59
TraesCS5D01G493200.1	Wheat	mitochondrion, plastid	36.76	19.59
TraesCS5A01G479600.1	Wheat	plastid	36.76	19.56
Os03t0821300-01	Rice	mitochondrion, nucleus, peroxisome, plastid	36.76	19.56
EER90623	Sorghum	plastid	36.47	19.56
HORVU5Hr1G113240.1	Barley	plastid	36.76	19.53
Zm00001d012962_P001	Maize	mitochondrion	35.88	19.3
CDY41610	Canola	nucleus	33.53	19.19
AT3G09400.1	Thale cress	cytosol, peroxisome, plastid	36.18	18.92
KRG99924	Soybean	cytosol, mitochondrion, nucleus, plastid	32.06	18.26
Bra029766.1-P	Field mustard	nucleus	33.82	17.86
KRH49093	Soybean	cytosol, mitochondrion, nucleus, plastid	31.18	17.61
CDY07928	Canola	nucleus	33.82	17.37
CDX73980	Canola	nucleus	32.94	16.82
Bra001308.1-P	Field mustard	nucleus	33.82	16.81
Bra009593.1-P	Field mustard	nucleus	39.71	16.79
PGSC0003DMT400045127	Potato	nucleus	36.18	15.41
PGSC0003DMT400052881	Potato	nucleus	34.12	14.85
PGSC0003DMT400011807	Potato	nucleus	19.41	13.31
PGSC0003DMT400029441	Potato	cytosol, nucleus, peroxisome	19.41	12.67
PGSC0003DMT400028715	Potato	cytosol	10.59	9.57
PGSC0003DMT400005115	Potato	cytosol	10.59	9.52
PGSC0003DMT400068706	Potato	mitochondrion	10.59	9.4
PGSC0003DMT400060005	Potato	cytosol	10.29	9.11
PGSC0003DMT400046486	Potato	mitochondrion	10.29	9.02
PGSC0003DMT400066175	Potato	cytosol	9.12	8.27
PGSC0003DMT400058098	Potato	mitochondrion	9.41	8.06
PGSC0003DMT400009248	Potato	mitochondrion	9.12	7.95
PGSC0003DMT400013942	Potato	cytosol, mitochondrion	8.24	7.55
PGSC0003DMT400067223	Potato	mitochondrion	8.24	7.49
PGSC0003DMT400029771	Potato	cytosol, mitochondrion, peroxisome	8.24	7.25
PGSC0003DMT400029765	Potato	mitochondrion	8.24	6.85
PGSC0003DMT400029770	Potato	mitochondrion	8.53	6.81
PGSC0003DMT400064207	Potato	cytosol	7.35	6.72
PGSC0003DMT400029763	Potato	cytosol, mitochondrion	7.65	6.67
CDY71703	Canola	cytosol	2.35	4.0
CDY40354	Canola	cytosol	1.76	2.49
PGSC0003DMT400029776	Potato	cytosol	0.29	0.54

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.3	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR036457	UniProt:M1AH80	EnsemblPlantsGene:PGSC0003DMG400008839	PGSC:PGSC0003DMG400008839
EnsemblPlants:PGSC0003DMT400022786	InterPro:PP2C	InterPro:PPM-type_dom_sf	PANTHER:PTHR13832	PANTHER:PTHR13832:SF382	SUPFAM:SSF81606
UniParc:UPI000296B343	SEG:seg	:	:	:	:

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400008839]

Coordinates

chr9:+:1843150..1844172

Molecular Weight (calculated)

37382.6 Da

IEP (calculated)

8.434

GRAVY (calculated)

-0.500

Length

340 amino acids

Sequence
(BLAST)

001: MGNGVRKLNH CFAGDVGEIS KRHNDLNLTD PLDEGLGHSF CYIRPDPYSK PHLFSDDSSS SSTTTTISSA TSTTTTAAFC TISGASISAN TFTPLSTAHV
101: DFSAHVDKAS AFESSQFFSS IPLQPIPRGV FHSGPIPARV SNTGLGSGPV ERGFMSGPIE RSFISGPMEN QYDHIQRYKL KSKKWGLIRS LKKVFSSSFF
201: GYKEVKFTEK NNINVSEVKF IESNINVGNV LSSENSLGDD DDEGNDSFRG QNVQWAQGKA GEDRVHVVIS EEHGWVFVGI YDGFNGPDAT DFLLSNLYSN
301: VYKELKGPSP KRKNKKSNKN VIELNVNAPP KINKKKYIYI

Best Arabidopsis Sequence Match ( AT1G07630.1 )
(BLAST)

001: MGNGVTKLSI CFTGGGGERL RPKDISVLLP DPLDEGLGHS FCYVRPDPTL ISSSKVHSEE DTTTTTFRTI SGASVSANTA TPLSTSLYDP YGHIDRAAAF
101: ESTTSFSSIP LQPIPKSSGP IVLGSGPIER GFLSGPIERG FMSGPLDRVG LFSGPLDKPN SDHHHQFQRS FSHGLALRVG SRKRSLVRIL RRAISKTMSR
201: GQNSIVAPIK SVKDSDNWGI RSEKSRNLHN ENLTVNSLNF SSEVSLDDDV SLENQNLQWA QGKAGEDRVH VVVSEEHGWL FVGIYDGFNG PDAPDYLLSH
301: LYPVVHRELK GLLWDDSNVE SKSQDLERSN GDESCSNQEK DETCERWWRC EWDRESQDLD RRLKEQISRR SGSDRLTNHS EVLEALSQAL RKTEEAYLDT
401: ADKMLDENPE LALMGSCVLV MLMKGEDIYV MNVGDSRAVL GQKSEPDYWL AKIRQDLERI NEETMMNDLE GCEGDQSSLV PNLSAFQLTV DHSTNIEEEV
501: ERIRNEHPDD VTAVTNERVK GSLKVTRAFG AGFLKQPKWN NALLEMFQID YVGKSPYINC LPSLYHHRLG SKDRFLILSS DGLYQYFTNE EAVSEVELFI
601: TLQPEGDPAQ HLVQELLFRA AKKAGMDFHE LLEIPQGERR RYHDDVSIVV ISLEGRMWKS CV

Arabidopsis Description

PLL5PLL5 [Source:UniProtKB/TrEMBL;Acc:A0A178WGF5]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.