CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012962_P001	Maize	mitochondrion	93.53	93.83
Zm00001d034655_P001	Maize	peroxisome	88.49	91.22
Os03t0821300-01	Rice	mitochondrion, nucleus, peroxisome, plastid	88.64	87.95
TraesCS5B01G492700.1	Wheat	mitochondrion, plastid	83.6	84.53
HORVU5Hr1G113240.1	Barley	plastid	84.86	84.06
TraesCS5D01G493200.1	Wheat	mitochondrion, plastid	84.54	84.01
TraesCS5A01G479600.1	Wheat	plastid	84.54	83.88
CDY40354	Canola	cytosol	26.5	69.71
GSMUA_Achr5P29080_001	Banana	mitochondrion	59.31	65.16
GSMUA_Achr2P16350_001	Banana	mitochondrion	57.1	64.99
GSMUA_Achr10P...	Banana	mitochondrion, nucleus, plastid	58.83	61.25
CDY71703	Canola	cytosol	17.19	54.5
PGSC0003DMT400049278	Potato	cytosol, nucleus, peroxisome	49.53	52.33
Solyc10g086490.1.1	Tomato	cytosol	48.74	51.85
CDY62569	Canola	nucleus	48.58	50.16
Solyc09g010780.2.1	Tomato	cytosol	48.9	49.76
CDY44706	Canola	nucleus	45.74	48.99
CDY41610	Canola	nucleus	45.74	48.82
PGSC0003DMT400022788	Potato	cytosol, nucleus, peroxisome	48.27	48.49
AT3G09400.1	Thale cress	cytosol, peroxisome, plastid	49.37	48.15
AT5G02400.1	Thale cress	nucleus	50.16	47.18
Bra029766.1-P	Field mustard	nucleus	45.9	45.19
KRG99924	Soybean	cytosol, mitochondrion, nucleus, plastid	42.11	44.72
EER95099	Sorghum	cytosol, nucleus, peroxisome, plastid	43.38	44.57
CDY07928	Canola	nucleus	46.06	44.11
OQU92823	Sorghum	plastid	37.07	43.76
KRH49093	Soybean	cytosol, mitochondrion, nucleus, plastid	41.48	43.69
EES07427	Sorghum	plastid	41.17	43.57
CDX73980	Canola	nucleus	45.74	43.54
Bra001308.1-P	Field mustard	nucleus	45.9	42.54
EES17579	Sorghum	mitochondrion, peroxisome, plastid	38.8	41.98
Bra009593.1-P	Field mustard	nucleus	50.95	40.17
PGSC0003DMT400022786	Potato	cytosol, nucleus, peroxisome	19.56	36.47
EES12087	Sorghum	cytosol	25.55	31.09
EER90402	Sorghum	mitochondrion	18.77	30.59
OQU92535	Sorghum	nucleus	43.06	30.43
EER94559	Sorghum	cytosol	17.98	29.01
EER95550	Sorghum	mitochondrion, peroxisome, plastid	18.14	28.82
KXG26992	Sorghum	cytosol, mitochondrion	17.35	27.99
KXG30997	Sorghum	mitochondrion	17.03	27.84
KXG37497	Sorghum	mitochondrion	16.09	27.06
EER90579	Sorghum	cytosol, mitochondrion, peroxisome, plastid	16.09	26.7
EER95306	Sorghum	mitochondrion	14.98	24.23

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.3	Gene3D:3.60.40.10	EntrezGene:8057365	UniProt:C5WV10
EnsemblPlants:EER90623	ProteinID:EER90623	ProteinID:EER90623.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF382	SMART:SM00332	EnsemblPlantsGene:SORBI_3001G034100
SUPFAM:SSF81606	UniParc:UPI0001A81F91	RefSeq:XP_002463625.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:2587306..2590571

Molecular Weight (calculated)

68380.5 Da

IEP (calculated)

5.595

GRAVY (calculated)

-0.277

Length

634 amino acids

Sequence
(BLAST)

001: MGNSLACFCC AGGAAGRRRH VAPAALPSDP AYDEGLGHSF CYVRPDKVLV PFSADDDLVA DAKAAAAAEE ATTFRAISGA ALSANVSTPL STSVLLLLPD
101: DSTASSAAAA SSGFESSESF AAVPLQPVPR FPSGPICAPA GGGFLSGPIE RGFLSGPLDA ALMSGPLPGA ATSGRMGGAV PALRRSLSHG GRRLRNFTRA
201: LLARAEKLHD SLDLGSPDAA AAVAACGGGS AGLQWAQGKA GEDRVHIVVS EERGWVFVGI YDGFNGPDAT DFLVTHLYAA VHRELRGLLW DQCEREEQHD
301: THPDQPTSTT ASDHPDQPPN RRRARRSRPP RGADDDQRRW KCEWERDCSS LKPPTQRPAR SSSENDHLAV LKALARALRK TEEAYLDVAD KMVGEFPELA
401: LMGSCVLAML MKGEDMYLMN VGDSRAVLGT MDSVDLEQIS EGSFDGLVGD GTPLLSAVQL TSEHSTSVRE EVCRIRNEHP DDPSAISKDR VKGSLKVTRA
501: FGAGYLKQPK WNDALLEMFR IDYVGSSPYI TCNPSLFHHR LSTRDRFLIL SSDGLYQYFT NEEAVAQVEM FIATTPEGDP AQHLVEEVLF RAANKAGMDF
601: HELIEIPHGD RRRYHDDVSV IVISLEGRIW RSCV

Best Arabidopsis Sequence Match ( AT2G28890.1 )
(BLAST)

001: MGNGIGKLSK CLTGGAGRNK KPELSILEPD PLDEGLGHSF CYVRPDPTRV SSSKVHSEEE TTTFRTISGA SVSANTATPL STSLYDPYGH IDRAAAFEST
101: TSFSSIPLQP IPRSSGPIVP GSGPLERGFL SGPIERGFMS GPLDGSSGPI DGKTGSDQFQ RSFSHGLANL RVGSRKGSLV RVLRRAISKT ITRGQNSIVA
201: PIKPVKEPDW VFGSDKTRIH QIENNLTVNS LNFSSEGSLL DDDVSLESQN LQWAQGKAGE DRVHVVVSEE HGWLFVGIYD GFNGPDAPDY LLSHLYPAVH
301: RELKGLLWDD PKTDAKSSDE ADVENRDSSS EKKSKNWEES QRRWRCEWDR DLDRLLKDRS NGLDLDPDPN SSDVLKALSQ ALRKTEEAYL ENADMMLDEN
401: PELALMGSCV LVMLMKGEDV YLMNVGDSRA VLGQKAESDY WIGKIKQDLE RINEETMNDF DGCGDGEGAS LVPTLSAFQL TVDHSTNVEE EVNRIRKEHP
501: DDASAVSNER VKGSLKVTRA FGAGFLKQPK WNNALLEMFQ IDYKGTSPYI NCLPSLYHHR LGSKDQFLIL SSDGLYQYFT NEEAVSEVEL FITLQPEGDP
601: AQHLVQELLF RAAKKAGMDF HELLEIPQGE RRRYHDDVSI VVISLEGRMW KSCV

Arabidopsis Description

PLL4Probable protein phosphatase 2C 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZV25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.