Factsheet for PGSC0003DMT400029441

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g066870.2.1	Tomato	cytosol, nucleus, peroxisome	57.77	94.95
PGSC0003DMT400011807	Potato	nucleus	75.62	79.44
VIT_05s0020g01460.t01	Wine grape	cytosol, peroxisome, plastid	64.11	66.4
GSMUA_Achr10P...	Banana	cytosol	44.15	64.79
Bra022166.1-P	Field mustard	cytosol	28.79	64.38
KRH37115	Soybean	cytosol, nucleus, peroxisome	49.14	62.59
KRH02249	Soybean	cytosol, nucleus, peroxisome	62.19	61.83
KRH50856	Soybean	cytosol, nucleus, peroxisome	61.61	61.73
AT3G16560.1	Thale cress	cytosol, nucleus, peroxisome	56.43	59.63
CDY43107	Canola	cytosol, nucleus, peroxisome	56.05	59.59
CDX92079	Canola	cytosol, nucleus, peroxisome	55.85	58.67
Os04t0403701-01	Rice	cytosol, nucleus, peroxisome	52.59	52.69
EES12087	Sorghum	cytosol	52.21	52.21
HORVU2Hr1G071850.2	Barley	nucleus	51.63	51.83
TraesCS2A01G290500.1	Wheat	nucleus	51.63	51.83
TraesCS2B01G307000.1	Wheat	nucleus	51.44	51.64
Zm00001d025323_P004	Maize	cytosol, peroxisome, plastid	51.63	51.63
Zm00001d000124_P003	Maize	cytosol, peroxisome, plastid	51.44	51.44
TraesCS2D01G288400.1	Wheat	nucleus	51.25	48.99
PGSC0003DMT400060005	Potato	cytosol	21.11	28.65
PGSC0003DMT400068706	Potato	mitochondrion	20.92	28.46
PGSC0003DMT400058098	Potato	mitochondrion	21.5	28.21
PGSC0003DMT400009248	Potato	mitochondrion	20.73	27.69
PGSC0003DMT400046486	Potato	mitochondrion	20.54	27.58
PGSC0003DMT400005115	Potato	cytosol	19.77	27.25
PGSC0003DMT400028715	Potato	cytosol	19.58	27.13
PGSC0003DMT400064207	Potato	cytosol	19.0	26.61
PGSC0003DMT400049278	Potato	cytosol, nucleus, peroxisome	30.52	26.5
PGSC0003DMT400013942	Potato	cytosol, mitochondrion	18.81	26.42
PGSC0003DMT400029771	Potato	cytosol, mitochondrion, peroxisome	19.39	26.17
PGSC0003DMT400066175	Potato	cytosol	18.81	26.13
PGSC0003DMT400022788	Potato	cytosol, nucleus, peroxisome	31.29	25.83
PGSC0003DMT400067223	Potato	mitochondrion	18.43	25.67
PGSC0003DMT400029765	Potato	mitochondrion	19.96	25.43
PGSC0003DMT400029763	Potato	cytosol, mitochondrion	19.0	25.38
PGSC0003DMT400078173	Potato	nucleus	33.01	24.16
PGSC0003DMT400052881	Potato	nucleus	33.21	22.15
PGSC0003DMT400045127	Potato	nucleus	33.4	21.8
PGSC0003DMT400029770	Potato	mitochondrion	16.31	19.95
PGSC0003DMT400022786	Potato	cytosol, nucleus, peroxisome	12.67	19.41
PGSC0003DMT400029776	Potato	cytosol	6.33	17.93

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.3	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	UniProt:M1AST8	PFAM:PF00481
EnsemblPlantsGene:PGSC0003DMG400011321	PGSC:PGSC0003DMG400011321	EnsemblPlants:PGSC0003DMT400029441	InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF309	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI0002957FDC
SEG:seg	:	:	:	:	:

Description

Protein phosphatase-2c [Source:PGSC_GENE;Acc:PGSC0003DMG400011321]

Coordinates

chr1:+:58016454..58020478

Molecular Weight (calculated)

56911.2 Da

IEP (calculated)

4.870

GRAVY (calculated)

-0.228

Length

521 amino acids

Sequence
(BLAST)

001: MHAQSITDPG EEIKISFGYN FTDDSGEESD GIDNCHGIKL HRANNSFSCL SGAALSGNAT LANTNICNGL FGAEILPALD SPTSFRRIPS SQSFSRLDLL
101: SSSLQSNLSI LSCSPSSPSA LHDDESFSWR STSAPRNEGF LNATEFKIAG GAAGEDRVQA VCSEENGSLF CGIYDGFNGR DAADFLAGTL YETIGNYLNL
201: LDWEMEQEPG KLSDRLGFCG TLHDAVQDDR SSIKVKDTSG NINQGSYVDC SAKVEKPCDS FKKKVLKSLE LALLQAENDF LHMVEQEMDD RPDLVSIGCC
301: VLVVFLHGKN MYVLNLGDSR AVLATDSDVV SISKDEVLQA VQLTVSHNVE DESERTRLLK DHPDDPSTIV AGKVKGRLKV TRALGVGYLK KKTMNDALMG
401: ILRIRNLISP PYVSVQPHMT VHEISNSDQF VVLGSDGLFD FFSNDEVVKL VHSYILCHPS GDPAKYLVEQ LVMRAADCAG FSMEELMSIP AGRRRKYHDD
501: ITVIVINLGM NKRTSKASTY Q

Best Arabidopsis Sequence Match ( AT3G16560.1 )
(BLAST)

001: MQEGTDPYGE IEISFGYQCN NKKIGIPEDK IADGREVLGG FRLQKTSSFS CLSGAALSGN PTLANTNICN GVIGSEILPS LDSPKSFRKV PSSPALSKLD
101: ILSPSLHGSM VSLSCSSSTS PSPPEPESCY LTSMSSPSSV NEGFLLSAME VQVAGGAAGE DRVQAVCSEE NGWLFCAIYD GFNGRDAADF LACTLYESIV
201: FHLQLLDRQM KQTKSDDDGE KLELLSNISN VDYSSTDLFR QGVLDCLNRA LFQAETDFLR MVEQEMEERP DLVSVGSCVL VTLLVGKDLY VLNLGDSRAV
301: LATYNGNKKL QAVQLTEDHT VDNEVEEARL LSEHLDDPKI VIGGKIKGKL KVTRALGVGY LKKEKLNDAL MGILRVRNLL SPPYVSVEPS MRVHKITESD
401: HFVIVASDGL FDFFSNEEAI GLVHSFVSSN PSGDPAKFLL ERLVAKAAAR AGFTLEELTN VPAGRRRRYH DDVTIMVITL GTDQRTSKAS TFV

Arabidopsis Description

Protein phosphatase 2C family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VFN3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.