Factsheet for PGSC0003DMT400029771

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029765	Potato	mitochondrion	84.2	79.46
Solyc10g078810.1.1	Tomato	cytosol	83.68	73.74
PGSC0003DMT400029770	Potato	mitochondrion	79.02	71.6
PGSC0003DMT400029776	Potato	cytosol	33.68	70.65
PGSC0003DMT400029763	Potato	cytosol, mitochondrion	65.54	64.87
VIT_08s0007g06510.t01	Wine grape	mitochondrion	56.74	56.15
GSMUA_Achr8P13470_001	Banana	mitochondrion	55.44	56.02
KRH38102	Soybean	mitochondrion	54.15	54.29
KRH71850	Soybean	mitochondrion	51.3	54.1
KRG95384	Soybean	mitochondrion	54.15	53.45
KXG26992	Sorghum	cytosol, mitochondrion	54.4	53.44
TraesCS2B01G478400.2	Wheat	cytosol, mitochondrion, peroxisome, plastid	53.89	53.33
TraesCS2A01G456300.2	Wheat	cytosol, mitochondrion, peroxisome, plastid	53.63	53.08
Bra009224.1-P	Field mustard	cytosol, mitochondrion	47.41	53.04
TraesCS2D01G456600.2	Wheat	mitochondrion	53.37	52.82
Os02t0685600-01	Rice	mitochondrion, plasma membrane	52.85	52.71
KXG30997	Sorghum	mitochondrion	52.85	52.58
HORVU2Hr1G104630.4	Barley	cytosol, mitochondrion, nucleus, peroxisome	53.11	52.56
AT5G06750.3	Thale cress	cytosol, mitochondrion	52.07	51.15
Bra028720.1-P	Field mustard	mitochondrion	50.26	50.52
PGSC0003DMT400068706	Potato	mitochondrion	46.89	47.26
PGSC0003DMT400028715	Potato	cytosol	44.3	45.48
PGSC0003DMT400064207	Potato	cytosol	42.75	44.35
PGSC0003DMT400066175	Potato	cytosol	43.01	44.27
PGSC0003DMT400046486	Potato	mitochondrion	44.3	44.07
PGSC0003DMT400013942	Potato	cytosol, mitochondrion	42.23	43.94
PGSC0003DMT400067223	Potato	mitochondrion	42.49	43.85
PGSC0003DMT400009248	Potato	mitochondrion	43.78	43.33
PGSC0003DMT400005115	Potato	cytosol	41.71	42.59
PGSC0003DMT400058098	Potato	mitochondrion	43.26	42.07
PGSC0003DMT400060005	Potato	cytosol	41.19	41.41
CDY40818	Canola	mitochondrion	12.95	39.68
CDY51276	Canola	mitochondrion	8.29	38.55
PGSC0003DMT400029441	Potato	cytosol, nucleus, peroxisome	26.17	19.39
PGSC0003DMT400011807	Potato	nucleus	24.87	19.35
PGSC0003DMT400049278	Potato	cytosol, nucleus, peroxisome	27.2	17.5
PGSC0003DMT400022788	Potato	cytosol, nucleus, peroxisome	26.94	16.48
PGSC0003DMT400078173	Potato	nucleus	27.46	14.89
PGSC0003DMT400045127	Potato	nucleus	27.98	13.53
PGSC0003DMT400052881	Potato	nucleus	25.91	12.8
PGSC0003DMT400022786	Potato	cytosol, nucleus, peroxisome	7.25	8.24

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:102603125	MapMan:18.4.24.2.4	Gene3D:3.60.40.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169
GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457	UniProt:M1ATD7	PFAM:PF00481	EnsemblPlantsGene:PGSC0003DMG402011442
PGSC:PGSC0003DMG402011442	EnsemblPlants:PGSC0003DMT400029771	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF239	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI000295E672	RefSeq:XP_006362220.1	SEG:seg	:	:	:

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG402011442]

Coordinates

chr10:+:58909999..58912502

Molecular Weight (calculated)

43248.5 Da

IEP (calculated)

6.344

GRAVY (calculated)

-0.172

Length

386 amino acids

Sequence
(BLAST)

001: MVSWLDRTVA ACCQPLGRYV GLSSGEDGVL GGVDYPLLWY RDLEKHSWWG VLFAVAQANQ VCEDYGHVEP GREGTFVGVY DGHGGHDASR FVCDNLSRHL
101: ITLAQEKGTI DEEVLNNAFA ATEDGFLSIV EREFHVDPTI ATTGCCCLVG VIWKRTLYVA NLGDCRAVLG HIGRFNRIVA EQLTDDHNAR IKEVRDELRA
201: LHPDDPNIVR RVRKTWRVKG IIQVTRAIGD ASLKKPEFAH GVMEPFRRPV VRADPSVSSR NLQPCDRFVI FASDGLWDFL SNEKAVQIVH AYPRQGIARR
301: LVLSALNVAA HARKLKYGDL MNYDKGVRRA FHDDITVVVI FIDHEMLNDE LTVPGMSVRG FVDTHRPSDF NIAQEVATET ELTETV

Best Arabidopsis Sequence Match ( AT3G17090.1 )
(BLAST)

001: MSGSLMNLFS LCFKPFGHVC DNSEAGSGGG GGVSGGTGGE GKDGLLWFRD LGKYCGGDFS MAVIQANQVL EDQSQVESGN FGTFVGVYDG HGGPEAARYV
101: CDHLFNHFRE ISAETQGVVT RETIERAFHA TEEGFASIVS ELWQEIPNLA TVGTCCLVGV IYQNTLFVAS LGDSRVVLGK KGNCGGLSAI QLSTEHNANN
201: EDIRWELKDL HPDDPQIVVF RHGVWRVKGI IQVSRSIGDM YMKRPEFNKE PISQKFRIAE PMKRPLMSAT PTILSHPLHP NDSFLIFASD GLWEHLTNEK
301: AVEIVHNHPR AGSAKRLIKA ALHEAARKRE MRYSDLRKID KKVRRHFHDD ITVIVVFLNH DLISRGHINS TQDTTVSIRS ALEH

Arabidopsis Description

Probable protein phosphatase 2C 42 [Source:UniProtKB/Swiss-Prot;Acc:Q0V7V2]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.