Factsheet for PGSC0003DMT400078173

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076100.2.1	Tomato	nucleus	97.89	98.45
Bra015596.1-P	Field mustard	endoplasmic reticulum, plasma membrane	27.81	73.88
CDY71973	Canola	cytosol, nucleus, peroxisome	54.49	73.07
CDY71801	Canola	cytosol	55.62	72.66
KRH24796	Soybean	nucleus	72.75	71.94
KRH29800	Soybean	cytosol, nucleus, plastid	72.61	71.81
AT1G07630.1	Thale cress	cytosol, nucleus, peroxisome	66.71	71.75
AT2G28890.1	Thale cress	nucleus	65.59	71.41
CDY57256	Canola	cytosol, nucleus, peroxisome	58.01	70.72
Bra041012.1-P	Field mustard	nucleus	67.13	70.5
CDX95140	Canola	cytosol, mitochondrion, nucleus	60.81	69.84
CDY06718	Canola	mitochondrion, plastid	61.8	69.73
Bra030695.1-P	Field mustard	cytosol, nucleus, peroxisome	56.46	69.43
VIT_08s0007g00310.t01	Wine grape	nucleus	64.61	69.07
CDY15623	Canola	cytosol, mitochondrion, nucleus, peroxisome	56.04	68.67
PGSC0003DMT400049278	Potato	cytosol, nucleus, peroxisome	50.7	60.17
PGSC0003DMT400022788	Potato	cytosol, nucleus, peroxisome	51.26	57.84
PGSC0003DMT400022786	Potato	cytosol, nucleus, peroxisome	23.46	49.12
PGSC0003DMT400045127	Potato	nucleus	46.07	41.1
PGSC0003DMT400052881	Potato	nucleus	44.24	40.33
PGSC0003DMT400011807	Potato	nucleus	23.31	33.47
PGSC0003DMT400029441	Potato	cytosol, nucleus, peroxisome	24.16	33.01
PGSC0003DMT400068706	Potato	mitochondrion	17.7	32.9
PGSC0003DMT400060005	Potato	cytosol	17.7	32.81
PGSC0003DMT400005115	Potato	cytosol	17.28	32.54
PGSC0003DMT400009248	Potato	mitochondrion	17.7	32.31
PGSC0003DMT400046486	Potato	mitochondrion	17.42	31.96
PGSC0003DMT400058098	Potato	mitochondrion	17.7	31.74
PGSC0003DMT400028715	Potato	cytosol	16.71	31.65
PGSC0003DMT400066175	Potato	cytosol	16.01	30.4
PGSC0003DMT400013942	Potato	cytosol, mitochondrion	15.73	30.19
PGSC0003DMT400064207	Potato	cytosol	15.03	28.76
PGSC0003DMT400029763	Potato	cytosol, mitochondrion	15.31	27.95
PGSC0003DMT400067223	Potato	mitochondrion	14.61	27.81
PGSC0003DMT400029771	Potato	cytosol, mitochondrion, peroxisome	14.89	27.46
PGSC0003DMT400029765	Potato	mitochondrion	15.03	26.16
PGSC0003DMT400029770	Potato	mitochondrion	12.78	21.36
PGSC0003DMT400029776	Potato	cytosol	4.35	16.85

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:102594233	MapMan:18.4.24.2.3	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	UniProt:M1CZJ3
PFAM:PF00481	EnsemblPlantsGene:PGSC0003DMG400030410	PGSC:PGSC0003DMG400030410	EnsemblPlants:PGSC0003DMT400078173	InterPro:PP2C	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF228	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI000295E54D	RefSeq:XP_006350766.1	SEG:seg	:	:	:

Description

Protein phosphatase 2C 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400030410]

Coordinates

chr6:-:56600282..56603782

Molecular Weight (calculated)

79708.4 Da

IEP (calculated)

5.393

GRAVY (calculated)

-0.538

Length

712 amino acids

Sequence
(BLAST)

001: MGNGVGKLSV CFTSGGAVEG RRRKDFPLMI SDPLEDLGHS FCYVRPDQTR ISSSKVHSEE TTTFRSISGA SVSANTSTPL STAFVDLYSY NSIDRSSAFE
101: GSTSFASIPL QPIPRNSSIH SGPLFTSGLV PASGPMERGF MSGPIERGFQ SGPLDRGLYS GPLDRGCSDQ FQRSYSHGFA LRSRSKKGSF FRVLQRAISK
201: TLSRGQNSIV APIKGSISVK EGDWVVGAEK QNELTISSVN FSSECSLDDD DTLDNQNLQW AQGKAGEDRV HVVVSEEHGW VFVGIYDGFN GPDAPDFLVS
301: NLYPAVHKEL KGLLWDDKLD NNSSVTIPSP SLAVEESNQT IDDEFSRDRP IDSCSRCVEQ ENYPSAREDL SFDSRLRKKR GKGSKNRYRG VSKKWEENQR
401: RWRCEWDRER LELDRRLKEQ LNGNGSNGSG SVNHADVLKA LSQALKKTEE AYLDLADRMN MENPELALMG SCVLVMLMKG EDVYVMNVGD SRAVLAQKKE
501: PNLWSQDLER INEETLKDLE LFDGDESDCV PNLTAFQLSI DHSTSVEEEV QRIKSEHPDD PCALMNDRVK GSLKVTRAFG AGFLKQPKWN NALLEMFRID
601: YIGTSPYISC LPSLYHHRLG PRDRFLILSS DGLYQYFTNE EAVLEVEHFI SWSPEGDPAQ HLIETVLFRA AKKAGMEFHE LLEIPQGDRR RYHDDVSIIV
701: ISLEGRIWRS SA

Best Arabidopsis Sequence Match ( AT1G07630.1 )
(BLAST)

001: MGNGVTKLSI CFTGGGGERL RPKDISVLLP DPLDEGLGHS FCYVRPDPTL ISSSKVHSEE DTTTTTFRTI SGASVSANTA TPLSTSLYDP YGHIDRAAAF
101: ESTTSFSSIP LQPIPKSSGP IVLGSGPIER GFLSGPIERG FMSGPLDRVG LFSGPLDKPN SDHHHQFQRS FSHGLALRVG SRKRSLVRIL RRAISKTMSR
201: GQNSIVAPIK SVKDSDNWGI RSEKSRNLHN ENLTVNSLNF SSEVSLDDDV SLENQNLQWA QGKAGEDRVH VVVSEEHGWL FVGIYDGFNG PDAPDYLLSH
301: LYPVVHRELK GLLWDDSNVE SKSQDLERSN GDESCSNQEK DETCERWWRC EWDRESQDLD RRLKEQISRR SGSDRLTNHS EVLEALSQAL RKTEEAYLDT
401: ADKMLDENPE LALMGSCVLV MLMKGEDIYV MNVGDSRAVL GQKSEPDYWL AKIRQDLERI NEETMMNDLE GCEGDQSSLV PNLSAFQLTV DHSTNIEEEV
501: ERIRNEHPDD VTAVTNERVK GSLKVTRAFG AGFLKQPKWN NALLEMFQID YVGKSPYINC LPSLYHHRLG SKDRFLILSS DGLYQYFTNE EAVSEVELFI
601: TLQPEGDPAQ HLVQELLFRA AKKAGMDFHE LLEIPQGERR RYHDDVSIVV ISLEGRMWKS CV

Arabidopsis Description

PLL5PLL5 [Source:UniProtKB/TrEMBL;Acc:A0A178WGF5]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.