CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015596.1-P	Field mustard	endoplasmic reticulum, plasma membrane	40.25	94.78
CDX95140	Canola	cytosol, mitochondrion, nucleus	91.6	93.23
CDY57256	Canola	cytosol, nucleus, peroxisome	77.97	84.25
CDY15623	Canola	cytosol, mitochondrion, nucleus, peroxisome	76.39	82.96
AT1G07630.1	Thale cress	cytosol, nucleus, peroxisome	86.53	82.48
CDY71801	Canola	cytosol	67.51	78.17
CDY71973	Canola	cytosol, nucleus, peroxisome	65.29	77.59
CDY40354	Canola	cytosol	26.47	69.29
VIT_06s0004g04600.t01	Wine grape	nucleus	73.22	63.81
KRH24796	Soybean	nucleus	71.95	63.06
KRH29800	Soybean	cytosol, nucleus, plastid	71.32	62.5
Solyc06g076100.2.1	Tomato	nucleus	69.41	61.86
PGSC0003DMT400078173	Potato	nucleus	69.73	61.8
CDY71703	Canola	cytosol	18.23	57.5
CDY44706	Canola	nucleus	50.08	53.38
CDY41610	Canola	nucleus	49.92	53.03
CDY62569	Canola	nucleus	50.24	51.63
CDY07928	Canola	nucleus	49.13	46.83
CDX73980	Canola	nucleus	49.29	46.7
CDY68192	Canola	mitochondrion, nucleus, plastid	38.99	43.54
CDY59038	Canola	plastid	37.88	41.71
CDY31682	Canola	nucleus, plastid	43.26	41.05
CDX84217	Canola	nucleus, plastid	42.95	40.87
CDY41568	Canola	cytosol, nucleus, peroxisome	48.97	36.31
CDX80059	Canola	cytosol, nucleus, peroxisome	48.65	36.12
CDY43107	Canola	cytosol, nucleus, peroxisome	27.73	35.71
CDX92079	Canola	cytosol, nucleus, peroxisome	27.73	35.28
CDX73725	Canola	vacuole	19.81	33.16
CDY16313	Canola	extracellular	19.33	32.36
CDY55405	Canola	cytosol, nucleus, plastid	18.7	31.98
CDY33283	Canola	plastid	19.33	31.94
CDY04862	Canola	cytosol, mitochondrion, plastid	18.07	31.67
CDY10428	Canola	mitochondrion	17.75	30.85
CDX70348	Canola	cytosol, mitochondrion	17.75	30.85
CDY11224	Canola	cytosol	17.43	30.81
CDX80837	Canola	cytosol, mitochondrion	17.75	30.77
CDX76124	Canola	mitochondrion	18.23	30.75
CDX90277	Canola	cytosol, mitochondrion, nucleus	18.38	30.53
CDY02904	Canola	mitochondrion	18.07	30.48
CDY12086	Canola	cytosol, mitochondrion, nucleus	18.23	30.26
CDX73413	Canola	mitochondrion	18.38	29.97
CDY51441	Canola	mitochondrion	18.38	29.97
CDY52665	Canola	cytosol	17.59	29.29
CDY54807	Canola	nucleus, peroxisome, plastid	18.07	29.23
CDY50535	Canola	cytosol, mitochondrion, plastid	17.91	29.2
CDY42159	Canola	cytosol	17.43	29.02
CDX70071	Canola	cytosol, mitochondrion	17.59	28.98
CDX75902	Canola	plastid	17.27	28.91
CDY05001	Canola	cytosol, mitochondrion	17.91	28.9
CDY14069	Canola	cytosol, mitochondrion	17.91	28.9
CDY08420	Canola	cytosol, mitochondrion, plastid	17.27	28.76
CDY39026	Canola	cytosol, plastid, vacuole	17.12	28.57
CDY34992	Canola	cytosol, plastid, vacuole	17.12	28.57
CDX98953	Canola	cytosol, mitochondrion	17.27	28.46
CDX72438	Canola	mitochondrion	16.64	28.07
CDY40818	Canola	mitochondrion	5.55	27.78
CDY70696	Canola	extracellular, peroxisome	14.26	27.78
CDY28332	Canola	mitochondrion	16.64	27.34
CDY51944	Canola	mitochondrion	16.64	27.27
CDY49385	Canola	mitochondrion	16.16	27.27
CDY29015	Canola	cytosol	14.9	26.11
CDY51276	Canola	mitochondrion	3.33	25.3
CDX78002	Canola	vacuole	19.81	25.05

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.3	GO:A0A078F4U1	EnsemblPlants:CDY06718	ProteinID:CDY06718
ProteinID:CDY06718.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722	GO:GO:0006464
GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00122902001	InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF228	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI0004EEA45A	SEG:seg	:	:	:	:

Description

BnaA10g04970D

Coordinates

chrLK031972:+:467359..469679

Molecular Weight (calculated)

70333.8 Da

IEP (calculated)

5.582

GRAVY (calculated)

-0.495

Length

631 amino acids

Sequence
(BLAST)

001: MGNGVTKLST CFRGGYSFRQ KHISVPPPTD PLDEGLGHSF CYVRPEPTLI TCSKVHSEEE TTMFRTISGA SVSANAATPL STSLYDPYGH IDRAAAFEST
101: TSFPSIPLQP IPKSSGGGGG GGGPVALGSG PIERGFLSGP IERGFSSGPL ELFSGPLEKP ISDHQFQRSF SHGLALRVGS RKRSLVRILR RAISRTVSRG
201: QNSIVAPLNS EGTLDDDVSL EGQNLQWAQG KAGEDRVHVV VSEEHGWLFV GIYDGFNGPD ATDYLLSHLY PTLHRELKGL LWDDPNIESK PQDLDRSCHD
301: GSCLGQEDIN HCEGRWRCEW DREKKDLDRR LKEQINNRRS GSDSHQLTNH SDVLKALSQA LRKTEEAYLD TADKMLEENP ELALMGSCVL VMLMKGEDIY
401: VMNVGDSRAV LGQKSESDYW LAKIRHDLKR INEETMKSDL RGCEGDHEVS NLSAFQLTVD HSTDVEEEVE RIRNEHSDDV SAVSNERVKG SLKVTRAFGA
501: GFLKQPKWNN ALLEMFQIDY IGESPYISCL PSLYHHRLGS KDRFLILSSD GLYQYFTNEE AVSEVELFIT LQPEGDPAQH LVQELLFRAA KKAGMDFHEL
601: LEIPQGERRR YHDDVSIVVI SLEGRMWKSC V

Best Arabidopsis Sequence Match ( AT1G07630.1 )
(BLAST)

001: MGNGVTKLSI CFTGGGGERL RPKDISVLLP DPLDEGLGHS FCYVRPDPTL ISSSKVHSEE DTTTTTFRTI SGASVSANTA TPLSTSLYDP YGHIDRAAAF
101: ESTTSFSSIP LQPIPKSSGP IVLGSGPIER GFLSGPIERG FMSGPLDRVG LFSGPLDKPN SDHHHQFQRS FSHGLALRVG SRKRSLVRIL RRAISKTMSR
201: GQNSIVAPIK SVKDSDNWGI RSEKSRNLHN ENLTVNSLNF SSEVSLDDDV SLENQNLQWA QGKAGEDRVH VVVSEEHGWL FVGIYDGFNG PDAPDYLLSH
301: LYPVVHRELK GLLWDDSNVE SKSQDLERSN GDESCSNQEK DETCERWWRC EWDRESQDLD RRLKEQISRR SGSDRLTNHS EVLEALSQAL RKTEEAYLDT
401: ADKMLDENPE LALMGSCVLV MLMKGEDIYV MNVGDSRAVL GQKSEPDYWL AKIRQDLERI NEETMMNDLE GCEGDQSSLV PNLSAFQLTV DHSTNIEEEV
501: ERIRNEHPDD VTAVTNERVK GSLKVTRAFG AGFLKQPKWN NALLEMFQID YVGKSPYINC LPSLYHHRLG SKDRFLILSS DGLYQYFTNE EAVSEVELFI
601: TLQPEGDPAQ HLVQELLFRA AKKAGMDFHE LLEIPQGERR RYHDDVSIVV ISLEGRMWKS CV

Arabidopsis Description

PLL5PLL5 [Source:UniProtKB/TrEMBL;Acc:A0A178WGF5]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.