Factsheet for VIT_06s0004g04600.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015596.1-P	Field mustard	endoplasmic reticulum, plasma membrane	28.87	77.99
KRH24796	Soybean	nucleus	77.21	77.64
KRH29800	Soybean	cytosol, nucleus, plastid	77.07	77.5
CDY71801	Canola	cytosol	56.91	75.6
CDY71973	Canola	cytosol, nucleus, peroxisome	55.39	75.52
AT2G28890.1	Thale cress	nucleus	67.96	75.23
AT1G07630.1	Thale cress	cytosol, nucleus, peroxisome	68.51	74.92
Bra041012.1-P	Field mustard	nucleus	69.06	73.75
CDX95140	Canola	cytosol, mitochondrion, nucleus	62.85	73.39
CDY06718	Canola	mitochondrion, plastid	63.81	73.22
CDY57256	Canola	cytosol, nucleus, peroxisome	58.7	72.77
VIT_08s0007g00310.t01	Wine grape	nucleus	66.44	72.22
Bra030695.1-P	Field mustard	cytosol, nucleus, peroxisome	56.77	70.98
CDY15623	Canola	cytosol, mitochondrion, nucleus, peroxisome	56.35	70.22
VIT_02s0012g01100.t01	Wine grape	cytosol, nucleus, plastid	45.3	41.68
VIT_07s0005g02390.t01	Wine grape	mitochondrion, nucleus, peroxisome	44.34	39.58
VIT_05s0020g01460.t01	Wine grape	cytosol, peroxisome, plastid	24.17	34.79
VIT_01s0150g00510.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	24.17	33.4
VIT_13s0067g03500.t01	Wine grape	cytosol, mitochondrion, plastid	17.13	32.72
VIT_08s0040g02970.t01	Wine grape	cytosol	16.99	32.45
VIT_03s0038g02650.t01	Wine grape	mitochondrion	17.27	31.49
VIT_05s0077g00830.t01	Wine grape	extracellular	15.88	31.08
VIT_03s0091g00470.t01	Wine grape	mitochondrion	16.02	30.45
VIT_18s0001g09390.t01	Wine grape	mitochondrion	15.61	29.89
VIT_08s0007g06510.t01	Wine grape	mitochondrion	16.02	29.74
VIT_00s0434g00020.t01	Wine grape	cytosol	16.16	28.68
VIT_07s0129g00520.t01	Wine grape	cytosol	15.06	28.39

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100256990	MapMan:18.4.24.2.3	ProteinID:CCB43575	ProteinID:CCB43575.1
ncoils:Coil	UniProt:F6GV16	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF228	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI00021099FA	ArrayExpress:VIT_06s0004g04600	EnsemblPlantsGene:VIT_06s0004g04600	EnsemblPlants:VIT_06s0004g04600.t01	RefSeq:XP_010651025.1	SEG:seg

Description

No Description!

Coordinates

chr6:-:5570912..5573902

Molecular Weight (calculated)

80399.3 Da

IEP (calculated)

5.377

GRAVY (calculated)

-0.502

Length

724 amino acids

Sequence
(BLAST)

001: MGNGFAKLSI CFTGEGGARR RQDISVLISD PLDEGLGHSF CYIRPDQSRL SSSKVHSEET TTFRSISGAS VSANTSTPLS TAFVDLYSYN SIDRASAFES
101: STSFTSIPLQ PIPRNWMNSG PIPGSYGGIP GSGPLERGFL SGPIERGFMS GPIDRGLFSG PLEKSSTDQF QRSYSHGGFA FRPRSRKGSL IRVLQRAISK
201: TISRGQNSIV APIKGVVSVK EPDWLVGSEK HNENLTVSSV NLSSDGSLED DDSLESQNLQ WAQGKAGEDR VHVVVSEEHG WVFVGIYDGF NGPDAPDYLL
301: SNLYSAVHKE LKGLLWDDKH ESNPVAAPAS SPVPSEASNS ELEDSHLGSD VDLARNRMVD GCSHCSYQEY YPSGSGDVKF DSNSKRKKGK NSKNKYKGAA
401: KKWEENQRRW KCEWDRERLE LDRRLKEQLN GSNTDGSRSI NHSDVLKALS QALRKTEESY LEIADKMVME NPELALMGSC VLVMLMKGED VYVMNVGDSR
501: AVLAQKAEAD VWLGKIRQDL ERINEETLHD LEAMDNDNSN MIPTLSAFQL TVDHSTSVEE EVRRIKNEHP DDACAVMNDR VKGSLKVTRA FGAGFLKQPK
601: WNNALLEMFR IDYVGTSPYI SCLPSLYHHR LGPEDRFLIL SSDGLYQYLT NEEAVSEVEL FIALSPDGDP AQHLVEEVLF RAAKKAGMDF HELLEIPQGD
701: RRRYHDDVSI IVISLEGMIW RSCV

Best Arabidopsis Sequence Match ( AT1G07630.1 )
(BLAST)

001: MGNGVTKLSI CFTGGGGERL RPKDISVLLP DPLDEGLGHS FCYVRPDPTL ISSSKVHSEE DTTTTTFRTI SGASVSANTA TPLSTSLYDP YGHIDRAAAF
101: ESTTSFSSIP LQPIPKSSGP IVLGSGPIER GFLSGPIERG FMSGPLDRVG LFSGPLDKPN SDHHHQFQRS FSHGLALRVG SRKRSLVRIL RRAISKTMSR
201: GQNSIVAPIK SVKDSDNWGI RSEKSRNLHN ENLTVNSLNF SSEVSLDDDV SLENQNLQWA QGKAGEDRVH VVVSEEHGWL FVGIYDGFNG PDAPDYLLSH
301: LYPVVHRELK GLLWDDSNVE SKSQDLERSN GDESCSNQEK DETCERWWRC EWDRESQDLD RRLKEQISRR SGSDRLTNHS EVLEALSQAL RKTEEAYLDT
401: ADKMLDENPE LALMGSCVLV MLMKGEDIYV MNVGDSRAVL GQKSEPDYWL AKIRQDLERI NEETMMNDLE GCEGDQSSLV PNLSAFQLTV DHSTNIEEEV
501: ERIRNEHPDD VTAVTNERVK GSLKVTRAFG AGFLKQPKWN NALLEMFQID YVGKSPYINC LPSLYHHRLG SKDRFLILSS DGLYQYFTNE EAVSEVELFI
601: TLQPEGDPAQ HLVQELLFRA AKKAGMDFHE LLEIPQGERR RYHDDVSIVV ISLEGRMWKS CV

Arabidopsis Description

PLL5PLL5 [Source:UniProtKB/TrEMBL;Acc:A0A178WGF5]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.