Factsheet for VIT_02s0012g01100.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58222	Soybean	cytosol, nucleus, peroxisome	65.06	73.56
KRH04317	Soybean	cytosol, nucleus, plastid	65.18	73.18
Solyc08g007000.2.1	Tomato	nucleus	71.54	72.09
Solyc08g077150.2.1	Tomato	nucleus	72.43	71.61
PGSC0003DMT400045127	Potato	nucleus	72.43	71.43
KRH28277	Soybean	plastid	66.84	71.18
PGSC0003DMT400052881	Potato	nucleus	70.52	71.06
KRH77217	Soybean	plastid	67.6	70.65
CDY68192	Canola	mitochondrion, nucleus, plastid	48.67	67.79
CDY59038	Canola	plastid	48.16	66.14
CDY31682	Canola	nucleus, plastid	54.13	64.06
GSMUA_Achr5P13850_001	Banana	nucleus	48.67	62.99
CDX84217	Canola	nucleus, plastid	52.99	62.9
Bra017322.1-P	Field mustard	nucleus	58.7	62.6
Bra005350.1-P	Field mustard	mitochondrion, plastid	57.56	60.81
AT2G35350.1	Thale cress	nucleus	59.09	59.39
Zm00001d019519_P001	Maize	extracellular	9.78	59.23
TraesCS6B01G290600.1	Wheat	plastid	44.22	58.29
TraesCS6D01G251300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	44.22	58.29
HORVU6Hr1G066850.2	Barley	plastid	44.09	58.12
TraesCS6A01G263600.1	Wheat	plastid	44.09	58.12
EES07427	Sorghum	plastid	44.09	57.93
Zm00001d017670_P001	Maize	plastid	43.71	57.43
Os02t0690500-01	Rice	plastid	43.33	57.21
Zm00001d016370_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	16.52	49.81
VIT_08s0007g00310.t01	Wine grape	nucleus	38.88	45.95
VIT_06s0004g04600.t01	Wine grape	nucleus	41.68	45.3
VIT_07s0005g02390.t01	Wine grape	mitochondrion, nucleus, peroxisome	42.69	41.43
VIT_05s0020g01460.t01	Wine grape	cytosol, peroxisome, plastid	23.0	35.98
VIT_01s0150g00510.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	22.24	33.4
VIT_08s0040g02970.t01	Wine grape	cytosol	15.25	31.66
VIT_13s0067g03500.t01	Wine grape	cytosol, mitochondrion, plastid	14.99	31.13
VIT_05s0077g00830.t01	Wine grape	extracellular	14.1	30.0
VIT_08s0007g06510.t01	Wine grape	mitochondrion	14.74	29.74
VIT_18s0001g09390.t01	Wine grape	mitochondrion	14.1	29.37
VIT_03s0038g02650.t01	Wine grape	mitochondrion	14.74	29.22
VIT_03s0091g00470.t01	Wine grape	mitochondrion	14.1	29.13
VIT_07s0129g00520.t01	Wine grape	cytosol	13.21	27.08
VIT_00s0434g00020.t01	Wine grape	cytosol	13.34	25.74

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100264235	wikigene:100264235	MapMan:18.4.24.2.3	ProteinID:CCB57914
ProteinID:CCB57914.1	UniProt:F6HTA4	EMBL:FN596247	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722
GO:GO:0005488	GO:GO:0005543	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006139
GO:GO:0006355	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009058	GO:GO:0009653	GO:GO:0009826	GO:GO:0009933	GO:GO:0009987	GO:GO:0010074
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0016787	GO:GO:0019538	GO:GO:0040007
InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100264235	wikigene:LOC100264235	PFAM:PF00481	InterPro:PP2C
InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF241	SMART:SM00332
SUPFAM:SSF81606	TIGR:TC65050	UniParc:UPI0002109E77	ArrayExpress:VIT_02s0012g01100	EnsemblPlantsGene:VIT_02s0012g01100	EnsemblPlants:VIT_02s0012g01100.t01
RefSeq:XP_002278429	RefSeq:XP_002278429.1	RefSeq:XP_010663663.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:7063168..7078721

Molecular Weight (calculated)

86798.1 Da

IEP (calculated)

5.002

GRAVY (calculated)

-0.442

Length

787 amino acids

Sequence
(BLAST)

001: MGSGLSQLCP CFVPASRTAV EEPEVVFTAS EPLDETLGHS FCYVRSSARF LSPTQSDRFV SPSHSLRFSP SHEPVGRARA GPPETGFKAI SGASVSANTS
101: TPRTVLQLEN IYDDATDCVG GGVKGSIVNG FESTASFSAL PLQPVPRGGE ASGPIDRGFF MSGPIERGAL SGPLDANAGS DGGRVHFSAP LNGLYVKKKR
201: KKGISAIRKA FYRNFSEKKR PWVVPVLNFV GRKEVPAAGD GGDSEVKSES NVQWALGKAG EDRVHVVVSE EHGWLFVGIY DGFNGPDAPE FLMGNLYRAV
301: FNELEGLFWD VEEADPIVSG QECSNVTSEN VVIVEEATNQ SMESCVGEVG NESNNKEIGV GHEDSNPPPT DRGSAKRVTF QPEPPEIRRR RLWEFLAEDD
401: QEDGLDLSGS DRFAFSVDDA LSVNNAGSAV SRRWLLLSKL KHGLSKHKEG HGRKLFPWRF GLEDKEKVEV DNRVEETSGS RGRKRKVGPV DHELVLKAMS
501: RALELTELAY LDMTDKVLDQ NPELALMGSC LLVVLMRDED VYVMNVGDSR ALVAQYETQE GSSSVESKGE GKNRSNIDDI VEVSTDGCEK ENKVVNEDFV
601: KGMRLTALQL STDHSTSIEE EVIRIKNEHP DDSQCIVNDR VKGRLKVTRA FGAGFLKQPK WNDVLLEMFR NEYIGTAPYI SCSPSLCYHQ LCPRDQFLIL
701: SSDGLYQYLS NQEVVCEVEK FMEKFPEGDP AQHLIEELLS RAAKKAGLNF HELLDIPQGD RRKYHDDVTV MVISLEGRIW KSSGKYL

Best Arabidopsis Sequence Match ( AT2G35350.1 )
(BLAST)

001: MGSGFSSLLP CFNQGHRNRR RHSSAANPSH SDLIDSFREP LDETLGHSYC YVPSSSNRFI SPFPSDRFVS PTASFRLSPP HEPGRIRGSG SSEQLHTGFR
101: AISGASVSAN TSNSKTVLQL EDIYDDATES SFGGGVRRSV VNANGFEGTS SFSALPLQPG PDRSGLFMSG PIERGATSGP LDPPAGEISR SNSAGVHFSA
201: PLGGVYSKKR RKKKKKSLSW HPIFGGEKKQ RPWVLPVSNF VVGAKKENIV RPDVEAMAAS SGENDLQWAL GKAGEDRVQL AVFEKQGWLF AGIYDGFNGP
301: DAPEFLMANL YRAVHSELQG LFWELEEEDD NPTDISTREL EQQGEFEDHV NEMASSSCPA TEKEEEEMGK RLTSSLEVVE VKERKRLWEL LAEAQAEDAL
401: DLSGSDRFAF SVDDAIGAGN AVSVGSKRWL LLSKLKQGLS KQGISGRKLF PWKSGVEENE TEEVDNVGVE EGVDKRRKRR KAGTVDHELV LKAMSNGLEA
501: TEQAFLEMTD KVLETNPELA LMGSCLLVAL MRDDDVYIMN IGDSRALVAQ YQVEETGESV ETAERVEERR NDLDRDDGNK EPLVVDSSDS TVNNEAPLPQ
601: TKLVALQLTT DHSTSIEDEV TRIKNEHPDD NHCIVNDRVK GRLKVTRAFG AGFLKQPKLN DALLEMFRNE YIGTDPYISC TPSLRHYRLT ENDQFMVLSS
701: DGLYQYLSNV EVVSLAMEKF PDGDPAQHVI QELLVRAAKK AGMDFHELLD IPQGDRRKYH DDCTVLVIAL GGSRIWKSSG KYL

Arabidopsis Description

PLL1PLL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.