Factsheet for VIT_18s0001g09390.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g00350.t01
VIT_04s0008g02800.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33920.1	VIT_04s0008g02800.t01	AT2G24400.1	21798944
AT4G33920.1	VIT_03s0038g00350.t01	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0091g00470.t01	Wine grape	mitochondrion	73.02	72.44
VIT_07s0129g00520.t01	Wine grape	cytosol	73.02	71.88
GSMUA_Achr6P11170_001	Banana	cytosol	71.16	71.54
GSMUA_Achr3P02220_001	Banana	mitochondrion	68.52	68.88
KRH28403	Soybean	cytosol	68.25	68.8
GSMUA_Achr4P14220_001	Banana	mitochondrion	67.72	68.63
GSMUA_Achr2P21550_001	Banana	mitochondrion	69.58	68.13
Solyc02g092750.2.1	Tomato	cytosol	65.08	67.21
KRH77072	Soybean	cytosol	66.93	67.11
PGSC0003DMT400064207	Potato	cytosol	65.61	66.67
AT4G33920.1	Thale cress	mitochondrion	66.93	66.58
Bra036972.1-P	Field mustard	mitochondrion	65.61	66.31
CDX72438	Canola	mitochondrion	65.61	66.31
CDY49385	Canola	mitochondrion	65.34	66.04
Bra034592.1-P	Field mustard	mitochondrion	66.67	65.45
CDY28332	Canola	mitochondrion	66.4	65.36
CDY51944	Canola	mitochondrion	66.4	65.19
Os12t0580900-01	Rice	mitochondrion	66.14	63.78
HORVU5Hr1G018930.2	Barley	mitochondrion	64.02	63.19
TraesCS5A01G072500.1	Wheat	mitochondrion	63.23	62.4
TraesCS5D01G085200.1	Wheat	mitochondrion	62.96	62.14
TraesCS5B01G078500.1	Wheat	mitochondrion	62.96	62.14
Zm00001d048131_P001	Maize	cytosol	57.41	55.5
EER95306	Sorghum	mitochondrion	57.14	55.1
Os03t0207400-01	Rice	mitochondrion	56.08	54.08
VIT_08s0007g06510.t01	Wine grape	mitochondrion	55.29	53.59
TraesCS4D01G254500.1	Wheat	mitochondrion, nucleus, plastid, vacuole	53.97	52.44
VIT_08s0040g02970.t01	Wine grape	cytosol	52.12	51.98
VIT_13s0067g03500.t01	Wine grape	cytosol, mitochondrion, plastid	51.32	51.19
VIT_05s0077g00830.t01	Wine grape	extracellular	48.94	50.0
TraesCS4A01G050000.1	Wheat	plastid	54.76	48.36
TraesCS4B01G254700.1	Wheat	plastid	54.5	48.36
VIT_03s0038g02650.t01	Wine grape	mitochondrion	50.53	48.11
VIT_00s0434g00020.t01	Wine grape	cytosol	49.74	46.08
HORVU4Hr1G069380.3	Barley	peroxisome	28.31	44.77
VIT_01s0150g00510.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	26.72	19.27
VIT_05s0020g01460.t01	Wine grape	cytosol, peroxisome, plastid	25.4	19.09
VIT_08s0007g00310.t01	Wine grape	nucleus	27.51	15.62
VIT_06s0004g04600.t01	Wine grape	nucleus	29.89	15.61
VIT_02s0012g01100.t01	Wine grape	cytosol, nucleus, plastid	29.37	14.1
VIT_07s0005g02390.t01	Wine grape	mitochondrion, nucleus, peroxisome	29.1	13.56

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100854185	wikigene:100854185	MapMan:18.4.24.2.4	Gene3D:3.60.40.10
EMBL:AM451154	ProteinID:CAN63257	ProteinID:CAN63257.1	ProteinID:CBI19428	ProteinID:CBI19428.3	ncoils:Coil
UniProt:E0CP50	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0004722
GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457
EntrezGene:LOC100854185	wikigene:LOC100854185	PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF362	SMART:SM00332
SUPFAM:SSF81606	UniParc:UPI00015C7E6A	ArrayExpress:VIT_18s0001g09390	EnsemblPlantsGene:VIT_18s0001g09390	EnsemblPlants:VIT_18s0001g09390.t01	unigene:Vvi.19898
RefSeq:XP_003634350	RefSeq:XP_003634350.1	:	:	:	:

Description

No Description!

Coordinates

chr18:+:7874538..7878731

Molecular Weight (calculated)

42151.5 Da

IEP (calculated)

6.751

GRAVY (calculated)

-0.257

Length

378 amino acids

Sequence
(BLAST)

001: MLRKCWRQVE RVLGRGGGDE LLWHMDLKPH PCGDLSIAVV QANSSLEDQS QVFTCPSATF VGVFDGHGGP EASRFLNSHL FPRLHRLASE QGGLSTDIIK
101: KAFDDTEEQF LHLVKRSWPA RPQIALVGSC CLVGVISNDV LYVANLGDSR AVLGRRVSRG GKNMIVAERL STDHNVGDEE VRKEVEALHP DDAHIVVNNR
201: GVWRIKGIIQ VSRSIGDIYL KKPEFNRDPL FQQFGYPIPL KRPVMTAEPS IQVRKLISED LFLIFASDGL WEQLSDEAVV DIVHKNPRAG IAKRLVTAAL
301: QEAAKKNEIK YDELKKTSKG LRRHFHDDIT VVVMYLDHLH GSAGGSRFKE GSVDCISAPV DIYSLNVDEA EDPLYMDS

Best Arabidopsis Sequence Match ( AT4G33920.1 )
(BLAST)

001: MLRALARPLE RCLGSRASGD GLLWQSELRP HAGGDYSIAV VQANSRLEDQ SQVFTSSSAT YVGVYDGHGG PEASRFVNRH LFPYMHKFAR EHGGLSVDVI
101: KKAFKETEEE FCGMVKRSLP MKPQMATVGS CCLVGAISND TLYVANLGDS RAVLGSVVSG VDSNKGAVAE RLSTDHNVAV EEVRKEVKAL NPDDSQIVLY
201: TRGVWRIKGI IQVSRSIGDV YLKKPEYYRD PIFQRHGNPI PLRRPAMTAE PSIIVRKLKP QDLFLIFASD GLWEHLSDET AVEIVLKHPR TGIARRLVRA
301: ALEEAAKKRE MRYGDIKKIA KGIRRHFHDD ISVIVVYLDQ NKTSSSNSKL VKQGGITAPP DIYSLHSDEA EQRRLLNVLY

Arabidopsis Description

Probable protein phosphatase 2C 63 [Source:UniProtKB/Swiss-Prot;Acc:O81760]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.