Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_19s0014g04650.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24400.1 | VIT_19s0014g04650.t01 | AT4G27280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P10530_001 | Banana | cytosol | 51.23 | 66.4 |
| KRH52631 | Soybean | plastid | 63.58 | 60.23 |
| KRH04818 | Soybean | cytosol | 64.2 | 60.12 |
| KRH16185 | Soybean | nucleus | 65.43 | 59.89 |
| GSMUA_Achr9P19570_001 | Banana | cytosol, plastid | 45.06 | 59.84 |
| KRH61972 | Soybean | plastid | 62.35 | 59.06 |
| VIT_09s0054g00660.t01 | Wine grape | cytosol, plastid | 62.96 | 58.96 |
| VIT_09s0054g00740.t01 | Wine grape | cytosol, plastid | 63.58 | 58.19 |
| GSMUA_Achr5P24150_001 | Banana | mitochondrion | 41.36 | 55.83 |
| GSMUA_Achr6P03720_001 | Banana | cytosol | 49.38 | 53.33 |
| CDY20311 | Canola | cytosol, mitochondrion, nucleus | 56.17 | 52.0 |
| CDY46148 | Canola | cytosol, mitochondrion, nucleus | 56.17 | 51.7 |
| EES06266 | Sorghum | cytosol, nucleus, plastid | 39.51 | 51.61 |
| OQU82277 | Sorghum | nucleus | 54.32 | 51.46 |
| AT2G24400.1 | Thale cress | cytosol, mitochondrion, nucleus | 56.17 | 51.12 |
| Zm00001d002374_P001 | Maize | nucleus | 52.47 | 50.9 |
| Zm00001d026262_P001 | Maize | cytosol | 53.09 | 50.89 |
| Bra032097.1-P | Field mustard | cytosol, mitochondrion, nucleus | 55.56 | 50.85 |
| TraesCS6D01G104500.1 | Wheat | cytosol | 38.89 | 50.4 |
| TraesCS7A01G418100.1 | Wheat | mitochondrion | 41.36 | 50.0 |
| TraesCS6B01G143500.1 | Wheat | cytosol | 39.51 | 50.0 |
| TraesCS6A01G115700.1 | Wheat | cytosol | 39.51 | 50.0 |
| CDY36449 | Canola | cytosol, nucleus, plastid | 55.56 | 49.45 |
| Os04t0608300-01 | Rice | cytosol | 53.7 | 49.43 |
| TraesCS7D01G411100.1 | Wheat | cytosol, mitochondrion, nucleus | 41.36 | 49.26 |
| Os02t0143400-00 | Rice | cytosol, mitochondrion | 39.51 | 49.23 |
| TraesCS7B01G318200.1 | Wheat | cytosol, mitochondrion, nucleus | 41.36 | 48.91 |
| CDY13423 | Canola | nucleus | 53.7 | 48.88 |
| Zm00001d053884_P001 | Maize | cytosol | 39.51 | 48.48 |
| Bra024013.1-P | Field mustard | nucleus | 56.79 | 48.42 |
| CDX68733 | Canola | nucleus | 56.17 | 48.4 |
| CDY28255 | Canola | nucleus | 56.17 | 48.4 |
| Bra011258.1-P | Field mustard | nucleus | 55.56 | 47.87 |
| AT4G31320.1 | Thale cress | cytosol | 55.56 | 47.62 |
| TraesCS2D01G428000.1 | Wheat | nucleus | 51.85 | 47.19 |
| TraesCS2B01G451000.1 | Wheat | cytosol, mitochondrion, nucleus | 51.85 | 46.93 |
| OQU76999 | Sorghum | cytosol | 41.36 | 46.21 |
| TraesCS2A01G430400.1 | Wheat | nucleus | 51.85 | 46.15 |
| HORVU2Hr1G100360.1 | Barley | cytosol, mitochondrion, nucleus | 51.23 | 45.86 |
| Zm00001d036463_P001 | Maize | cytosol, nucleus, plastid | 40.74 | 44.9 |
| CDX72302 | Canola | nucleus | 56.17 | 43.54 |
| VIT_09s0054g00730.t01 | Wine grape | mitochondrion | 31.48 | 37.23 |
| HORVU7Hr1G096880.1 | Barley | mitochondrion | 41.98 | 35.6 |
| VIT_09s0054g00670.t01 | Wine grape | mitochondrion | 29.63 | 34.04 |
| Os06t0701900-00 | Rice | mitochondrion | 40.74 | 33.67 |
| VIT_11s0016g00520.t01 | Wine grape | cytosol | 33.33 | 33.13 |
| VIT_08s0007g03120.t01 | Wine grape | mitochondrion | 23.46 | 30.4 |
| VIT_11s0078g00400.t01 | Wine grape | plastid | 29.01 | 28.83 |
| VIT_09s0054g00680.t01 | Wine grape | mitochondrion | 26.54 | 26.22 |
Protein Annotations
| EntrezGene:100250771 | wikigene:100250771 | MapMan:35.2 | EMBL:AM479372 | ProteinID:CAN68562 | ProteinID:CAN68562.1 |
| ProteinID:CCB46665 | ProteinID:CCB46665.1 | UniProt:F6H2V4 | EMBL:FN595231 | GO:GO:0008150 | GO:GO:0009719 |
| GO:GO:0009733 | EntrezGene:LOC100250771 | wikigene:LOC100250771 | PFAM:PF02519 | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF59 |
| InterPro:SAUR_fam | TIGR:TC70879 | UniParc:UPI0001983078 | ArrayExpress:VIT_04s0008g02800 | EnsemblPlantsGene:VIT_04s0008g02800 | EnsemblPlants:VIT_04s0008g02800.t01 |
| RefSeq:XP_002280896 | RefSeq:XP_002280896.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4:+:2328075..2329742
Molecular Weight (calculated)
18216.9 Da
IEP (calculated)
9.536
GRAVY (calculated)
-0.450
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSKKSNKIT EIVRLQQILK KWRKLANTSK SSGNSSSIKN SNNNNSNKGK LLRRTLSLSE KSDVVPKGYL AVCVGEELKR FVIPTKYLSH QAFIILLREA
101: EEEFGFQQAG VLQIPCEVSA FENILKVVEK KDFRFLGEDA IGCCSSESQL NQSYHPQSPM CT
101: EEEFGFQQAG VLQIPCEVSA FENILKVVEK KDFRFLGEDA IGCCSSESQL NQSYHPQSPM CT
001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
Arabidopsis Description
At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.