Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24400.1 | EER88832 | AT4G27280.1 | 21798944 |
| AT2G24400.1 | KXG25648 | AT4G27280.1 | 21798944 |
| AT2G24400.1 | KXG33526 | AT4G27280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d026262_P001 | Maize | cytosol | 94.74 | 95.86 |
| Zm00001d002374_P001 | Maize | nucleus | 89.47 | 91.62 |
| Os04t0608300-01 | Rice | cytosol | 78.36 | 76.14 |
| GSMUA_Achr4P12510_001 | Banana | cytosol | 34.5 | 72.84 |
| TraesCS2D01G428000.1 | Wheat | nucleus | 73.1 | 70.22 |
| TraesCS2B01G451000.1 | Wheat | cytosol, mitochondrion, nucleus | 73.1 | 69.83 |
| HORVU2Hr1G100360.1 | Barley | cytosol, mitochondrion, nucleus | 73.1 | 69.06 |
| TraesCS2A01G430400.1 | Wheat | nucleus | 73.1 | 68.68 |
| GSMUA_Achr4P05740_001 | Banana | cytosol, plastid | 60.23 | 67.32 |
| KRH46980 | Soybean | cytosol | 46.2 | 55.63 |
| EES06266 | Sorghum | cytosol, nucleus, plastid | 39.77 | 54.84 |
| VIT_04s0008g02800.t01 | Wine grape | plastid | 51.46 | 54.32 |
| VIT_09s0054g00660.t01 | Wine grape | cytosol, plastid | 52.63 | 52.02 |
| KRH16185 | Soybean | nucleus | 53.8 | 51.98 |
| VIT_09s0054g00740.t01 | Wine grape | cytosol, plastid | 53.8 | 51.98 |
| KRH44681 | Soybean | plastid | 46.78 | 51.61 |
| KRH04818 | Soybean | cytosol | 51.46 | 50.87 |
| KRH52631 | Soybean | plastid | 50.29 | 50.29 |
| CDY20311 | Canola | cytosol, mitochondrion, nucleus | 51.46 | 50.29 |
| OQU76999 | Sorghum | cytosol | 42.11 | 49.66 |
| AT2G24400.1 | Thale cress | cytosol, mitochondrion, nucleus | 51.46 | 49.44 |
| CDY46148 | Canola | cytosol, mitochondrion, nucleus | 50.88 | 49.43 |
| Bra032097.1-P | Field mustard | cytosol, mitochondrion, nucleus | 50.88 | 49.15 |
| KRH61972 | Soybean | plastid | 48.54 | 48.54 |
| Bra011258.1-P | Field mustard | nucleus | 52.63 | 47.87 |
| CDY28255 | Canola | nucleus | 52.63 | 47.87 |
| CDY13423 | Canola | nucleus | 49.71 | 47.75 |
| AT4G31320.1 | Thale cress | cytosol | 52.63 | 47.62 |
| CDY36449 | Canola | cytosol, nucleus, plastid | 50.29 | 47.25 |
| CDX68733 | Canola | nucleus | 51.46 | 46.81 |
| Bra024013.1-P | Field mustard | nucleus | 50.88 | 45.79 |
| PGSC0003DMT400023703 | Potato | nucleus | 42.69 | 41.71 |
| CDX72302 | Canola | nucleus | 50.88 | 41.63 |
| Solyc03g124020.1.1 | Tomato | nucleus | 42.69 | 38.83 |
| EER90331 | Sorghum | mitochondrion | 20.47 | 26.12 |
| EER96781 | Sorghum | cytosol | 32.16 | 22.54 |
| OQU81155 | Sorghum | plastid | 22.22 | 21.47 |
| EES04503 | Sorghum | plastid | 20.47 | 18.23 |
Protein Annotations
| EnsemblPlants:OQU82277 | EnsemblPlantsGene:SORBI_3006G208300 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 | InterPro:SAUR_fam |
| PANTHER:PTHR31374 | PANTHER:PTHR31374:SF59 | PFAM:PF02519 | ProteinID:OQU82277 | ProteinID:OQU82277.1 | SEG:seg |
| UniParc:UPI0003C6FD3F | UniProt:A0A1Z5RF02 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:55811254..55812247
Molecular Weight (calculated)
18722.7 Da
IEP (calculated)
9.735
GRAVY (calculated)
-0.511
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQSGAKKSN KITEIVRMQQ MLKKWRKLSV TPKDKEPSSP TAAGGGGNAG ESKAKKFLKR TLSFTDGPPS GSPPPPPKGH LAVCVGPAMQ RFVIPMEYLK
101: HRAFAALLRE AEEEFGFQQE GVLRIPCEVP VFESILKAVE KNKKDAAFCY CSVEYAADEV GRGTPNNPLC R
101: HRAFAALLRE AEEEFGFQQE GVLRIPCEVP VFESILKAVE KNKKDAAFCY CSVEYAADEV GRGTPNNPLC R
001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
Arabidopsis Description
At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.