Factsheet for Solyc03g124020.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023703	Potato	nucleus	86.7	93.14
GSMUA_Achr1P10530_001	Banana	cytosol	39.36	59.2
KRH46980	Soybean	cytosol	41.49	54.93
GSMUA_Achr6P03720_001	Banana	cytosol	42.55	53.33
KRH44681	Soybean	plastid	43.09	52.26
GSMUA_Achr9P19570_001	Banana	cytosol, plastid	33.51	51.64
EES06266	Sorghum	cytosol, nucleus, plastid	33.51	50.81
GSMUA_Achr5P24150_001	Banana	mitochondrion	31.91	50.0
VIT_09s0054g00660.t01	Wine grape	cytosol, plastid	45.21	49.13
VIT_09s0054g00740.t01	Wine grape	cytosol, plastid	45.21	48.02
TraesCS6D01G104500.1	Wheat	cytosol	31.38	47.2
Os02t0143400-00	Rice	cytosol, mitochondrion	32.45	46.92
Zm00001d053884_P001	Maize	cytosol	32.45	46.21
TraesCS6B01G143500.1	Wheat	cytosol	31.38	46.09
TraesCS6A01G115700.1	Wheat	cytosol	31.38	46.09
TraesCS7A01G418100.1	Wheat	mitochondrion	32.45	45.52
TraesCS7D01G411100.1	Wheat	cytosol, mitochondrion, nucleus	32.45	44.85
TraesCS7B01G318200.1	Wheat	cytosol, mitochondrion, nucleus	32.45	44.53
OQU76999	Sorghum	cytosol	33.51	43.45
Zm00001d026262_P001	Maize	cytosol	38.83	43.2
Zm00001d036463_P001	Maize	cytosol, nucleus, plastid	33.51	42.86
OQU82277	Sorghum	nucleus	38.83	42.69
Os04t0608300-01	Rice	cytosol	39.36	42.05
Zm00001d002374_P001	Maize	nucleus	37.23	41.92
TraesCS2D01G428000.1	Wheat	nucleus	38.3	40.45
TraesCS2B01G451000.1	Wheat	cytosol, mitochondrion, nucleus	38.3	40.22
TraesCS2A01G430400.1	Wheat	nucleus	38.83	40.11
HORVU2Hr1G100360.1	Barley	cytosol, mitochondrion, nucleus	37.77	39.23
HORVU7Hr1G096880.1	Barley	mitochondrion	32.98	32.46
Solyc12g009280.1.1	Tomato	nucleus	30.32	31.84
Os06t0701900-00	Rice	mitochondrion	31.91	30.61
Solyc07g014620.1.1	Tomato	mitochondrion	23.94	30.0
Solyc05g046320.1.1	Tomato	plastid	26.6	29.07
Solyc07g042470.2.1	Tomato	cytosol	29.26	27.09
Solyc10g083320.1.1	Tomato	mitochondrion	17.55	25.78
Solyc05g025920.2.1	Tomato	nucleus	25.53	24.24
Solyc09g009980.1.1	Tomato	mitochondrion	17.55	22.3

Protein Annotations

EnsemblPlants:Solyc03g124020.1.1	EnsemblPlantsGene:Solyc03g124020.1	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733	InterPro:SAUR_fam
PANTHER:PTHR31374	PANTHER:PTHR31374:SF6	PFAM:PF02519	SEG:seg	UniParc:UPI0002765FC2	UniProt:K4BNA0
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:70726118..70726684

Molecular Weight (calculated)

21166.4 Da

IEP (calculated)

8.975

GRAVY (calculated)

-0.553

Length

188 amino acids

Sequence
(BLAST)

001: MDIPSNNKQL LRSGSSCNKI RQIVRLQQLL KKWKKIAAAS PSSTHLQRNT SSGTSINKFL KKTLSFSDKE DVSNSNNNNN VPKGCLAVLC VGKEEEKRFV
101: IPMDYLAHQS FQVLLREAEE EFGFQQQGIL KIPCQISLFD KILKTIQSNK QQPNEDTTIH NNVVGACCCS PDNHQQQHNI MPPQLCSI

Best Arabidopsis Sequence Match ( AT2G24400.1 )
(BLAST)

001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR

Arabidopsis Description

At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.