Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d014491_P001 | |
| Zm00001d031419_P001 | |
| Zm00001d043258_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24400.1 | Zm00001d014491_P001 | AT4G27280.1 | 21798944 |
| AT2G24400.1 | Zm00001d031419_P001 | AT4G27280.1 | 21798944 |
| AT2G24400.1 | Zm00001d043258_P001 | AT4G27280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU76999 | Sorghum | cytosol | 85.71 | 86.9 |
| TraesCS7A01G418100.1 | Wheat | mitochondrion | 67.35 | 73.88 |
| TraesCS7D01G411100.1 | Wheat | cytosol, mitochondrion, nucleus | 68.03 | 73.53 |
| TraesCS7B01G318200.1 | Wheat | cytosol, mitochondrion, nucleus | 68.03 | 72.99 |
| Zm00001d053884_P001 | Maize | cytosol | 57.82 | 64.39 |
| HORVU7Hr1G096880.1 | Barley | mitochondrion | 68.03 | 52.36 |
| Os06t0701900-00 | Rice | mitochondrion | 68.71 | 51.53 |
| Zm00001d002374_P001 | Maize | nucleus | 46.94 | 41.32 |
| VIT_04s0008g02800.t01 | Wine grape | plastid | 44.9 | 40.74 |
| Zm00001d026262_P001 | Maize | cytosol | 46.26 | 40.24 |
| KRH46980 | Soybean | cytosol | 38.78 | 40.14 |
| VIT_09s0054g00660.t01 | Wine grape | cytosol, plastid | 46.26 | 39.31 |
| VIT_09s0054g00740.t01 | Wine grape | cytosol, plastid | 45.58 | 37.85 |
| KRH52631 | Soybean | plastid | 43.54 | 37.43 |
| KRH44681 | Soybean | plastid | 39.46 | 37.42 |
| KRH16185 | Soybean | nucleus | 44.9 | 37.29 |
| KRH61972 | Soybean | plastid | 42.86 | 36.84 |
| KRH04818 | Soybean | cytosol | 42.86 | 36.42 |
| PGSC0003DMT400023703 | Potato | nucleus | 42.86 | 36.0 |
| AT2G24400.1 | Thale cress | cytosol, mitochondrion, nucleus | 40.82 | 33.71 |
| Solyc03g124020.1.1 | Tomato | nucleus | 42.86 | 33.51 |
| CDY20311 | Canola | cytosol, mitochondrion, nucleus | 38.78 | 32.57 |
| CDY46148 | Canola | cytosol, mitochondrion, nucleus | 38.78 | 32.39 |
| Bra032097.1-P | Field mustard | cytosol, mitochondrion, nucleus | 38.1 | 31.64 |
| CDY13423 | Canola | nucleus | 38.1 | 31.46 |
| Zm00001d004384_P001 | Maize | mitochondrion | 27.89 | 31.3 |
| AT4G31320.1 | Thale cress | cytosol | 40.14 | 31.22 |
| CDY36449 | Canola | cytosol, nucleus, plastid | 38.1 | 30.77 |
| Bra024013.1-P | Field mustard | nucleus | 39.46 | 30.53 |
| CDX68733 | Canola | nucleus | 38.1 | 29.79 |
| CDY28255 | Canola | nucleus | 38.1 | 29.79 |
| Bra011258.1-P | Field mustard | nucleus | 38.1 | 29.79 |
| Zm00001d005803_P001 | Maize | cytosol, mitochondrion, nucleus | 35.37 | 28.73 |
| Zm00001d014682_P001 | Maize | mitochondrion | 25.17 | 28.46 |
| CDX72302 | Canola | nucleus | 38.78 | 27.27 |
| Zm00001d020606_P001 | Maize | cytosol | 35.37 | 26.94 |
| Zm00001d045039_P001 | Maize | nucleus | 29.25 | 18.22 |
Protein Annotations
| EMBL:AF148498 | EnsemblPlants:Zm00001d036463_P001 | EnsemblPlants:Zm00001d036463_T001 | EnsemblPlantsGene:Zm00001d036463 | GO:GO:0008150 | GO:GO:0009719 |
| GO:GO:0009733 | InterPro:SAUR_fam | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF113 | PFAM:PF02519 | ProteinID:AQK81109.1 |
| SEG:seg | UniParc:UPI00000AB8C9 | UniProt:Q9M712 | MapMan:35.2 | : | : |
Description
small auxin up RNA1 small auxin up RNA1
Coordinates
chr6:-:89312912..89313355
Molecular Weight (calculated)
16579.7 Da
IEP (calculated)
7.306
GRAVY (calculated)
-0.567
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEYQQVHQQ QQQQGGRGSN KIRDIVRLQQ LLKKWKKLAT VTPSAASSGG RSSVPRGSFA VYVGEEMRRF VIPTEYLGHW AFADLLREAE EEFGFRHEGA
101: LRIPCDVDSF QGILRLVQQG QGGRRNEPAA MCDCDCSCSS ETEILCR
101: LRIPCDVDSF QGILRLVQQG QGGRRNEPAA MCDCDCSCSS ETEILCR
001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
Arabidopsis Description
At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.