Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d014491_P001 | |
| Zm00001d031419_P001 | |
| Zm00001d043258_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24400.1 | Zm00001d014491_P001 | AT4G27280.1 | 21798944 |
| AT2G24400.1 | Zm00001d031419_P001 | AT4G27280.1 | 21798944 |
| AT2G24400.1 | Zm00001d043258_P001 | AT4G27280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU82277 | Sorghum | nucleus | 95.86 | 94.74 |
| Zm00001d002374_P001 | Maize | nucleus | 88.17 | 89.22 |
| Os04t0608300-01 | Rice | cytosol | 76.92 | 73.86 |
| GSMUA_Achr4P12510_001 | Banana | cytosol | 33.73 | 70.37 |
| TraesCS2D01G428000.1 | Wheat | nucleus | 71.6 | 67.98 |
| TraesCS2B01G451000.1 | Wheat | cytosol, mitochondrion, nucleus | 71.6 | 67.6 |
| HORVU2Hr1G100360.1 | Barley | cytosol, mitochondrion, nucleus | 71.6 | 66.85 |
| TraesCS2A01G430400.1 | Wheat | nucleus | 71.6 | 66.48 |
| GSMUA_Achr4P05740_001 | Banana | cytosol, plastid | 59.76 | 66.01 |
| KRH46980 | Soybean | cytosol | 47.34 | 56.34 |
| VIT_04s0008g02800.t01 | Wine grape | plastid | 50.89 | 53.09 |
| KRH44681 | Soybean | plastid | 47.93 | 52.26 |
| VIT_09s0054g00660.t01 | Wine grape | cytosol, plastid | 52.07 | 50.87 |
| VIT_09s0054g00740.t01 | Wine grape | cytosol, plastid | 53.25 | 50.85 |
| KRH16185 | Soybean | nucleus | 52.66 | 50.28 |
| CDY20311 | Canola | cytosol, mitochondrion, nucleus | 51.48 | 49.71 |
| KRH52631 | Soybean | plastid | 50.3 | 49.71 |
| Zm00001d053884_P001 | Maize | cytosol | 38.46 | 49.24 |
| KRH04818 | Soybean | cytosol | 50.3 | 49.13 |
| AT2G24400.1 | Thale cress | cytosol, mitochondrion, nucleus | 51.48 | 48.88 |
| CDY46148 | Canola | cytosol, mitochondrion, nucleus | 50.89 | 48.86 |
| Bra032097.1-P | Field mustard | cytosol, mitochondrion, nucleus | 50.89 | 48.59 |
| AT4G31320.1 | Thale cress | cytosol | 53.25 | 47.62 |
| KRH61972 | Soybean | plastid | 47.93 | 47.37 |
| Bra011258.1-P | Field mustard | nucleus | 52.66 | 47.34 |
| CDY28255 | Canola | nucleus | 52.66 | 47.34 |
| CDY13423 | Canola | nucleus | 49.7 | 47.19 |
| CDY36449 | Canola | cytosol, nucleus, plastid | 50.3 | 46.7 |
| CDX68733 | Canola | nucleus | 51.48 | 46.28 |
| Zm00001d036463_P001 | Maize | cytosol, nucleus, plastid | 40.24 | 46.26 |
| Bra024013.1-P | Field mustard | nucleus | 50.89 | 45.26 |
| PGSC0003DMT400023703 | Potato | nucleus | 43.2 | 41.71 |
| CDX72302 | Canola | nucleus | 50.89 | 41.15 |
| Solyc03g124020.1.1 | Tomato | nucleus | 43.2 | 38.83 |
| Zm00001d004384_P001 | Maize | mitochondrion | 23.08 | 29.77 |
| Zm00001d005803_P001 | Maize | cytosol, mitochondrion, nucleus | 30.18 | 28.18 |
| Zm00001d020606_P001 | Maize | cytosol | 31.36 | 27.46 |
| Zm00001d014682_P001 | Maize | mitochondrion | 20.71 | 26.92 |
| Zm00001d045039_P001 | Maize | nucleus | 22.49 | 16.1 |
Protein Annotations
| EMBL:BT064136 | EMBL:EU967481 | EnsemblPlants:Zm00001d026262_P001 | EnsemblPlants:Zm00001d026262_T001 | EnsemblPlantsGene:Zm00001d026262 | EntrezGene:100284202 |
| GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 | InterPro:SAUR_fam | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF59 |
| PFAM:PF02519 | ProteinID:AQK45984.1 | SEG:seg | UniParc:UPI000182D50C | UniProt:B6TR66 | MapMan:35.2 |
Description
SAUR-like auxin-responsive protein family
Coordinates
chr10:+:142339502..142340011
Molecular Weight (calculated)
18504.4 Da
IEP (calculated)
9.766
GRAVY (calculated)
-0.518
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHSGAKKSN KITEVVRMQQ MLKKWRKLSV TPKEPSSPTS GGGGGNAGES KTRKFLKRTL SFTDGPPSGS PPPPPKGHLA VCVGPAMQRF VIPMEYLKHR
101: AFAALLREAE EEFGFQQEGV LRIPCEVPVF ESILKAVEKN KKDAAFCYCG VEYAADEVGR GTPNNPLCR
101: AFAALLREAE EEFGFQQEGV LRIPCEVPVF ESILKAVEKN KKDAAFCYCG VEYAADEVGR GTPNNPLCR
001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
Arabidopsis Description
At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.