Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P12510_001 | Banana | cytosol | 46.41 | 87.65 |
| GSMUA_Achr1P10530_001 | Banana | cytosol | 62.75 | 76.8 |
| GSMUA_Achr9P19570_001 | Banana | cytosol, plastid | 52.94 | 66.39 |
| GSMUA_Achr6P03720_001 | Banana | cytosol | 62.09 | 63.33 |
| Zm00001d002374_P001 | Maize | nucleus | 68.63 | 62.87 |
| OQU82277 | Sorghum | nucleus | 67.32 | 60.23 |
| Zm00001d026262_P001 | Maize | cytosol | 66.01 | 59.76 |
| GSMUA_Achr5P24150_001 | Banana | mitochondrion | 45.75 | 58.33 |
| Os04t0608300-01 | Rice | cytosol | 66.67 | 57.95 |
| HORVU2Hr1G100360.1 | Barley | cytosol, mitochondrion, nucleus | 67.97 | 57.46 |
| TraesCS2D01G428000.1 | Wheat | nucleus | 66.01 | 56.74 |
| TraesCS2A01G430400.1 | Wheat | nucleus | 66.67 | 56.04 |
| TraesCS2B01G451000.1 | Wheat | cytosol, mitochondrion, nucleus | 65.36 | 55.87 |
| GSMUA_Achr6P31030_001 | Banana | cytosol, mitochondrion | 37.25 | 37.01 |
| GSMUA_Achr7P19840_001 | Banana | cytosol | 36.6 | 36.36 |
| GSMUA_Achr5P22090_001 | Banana | cytosol | 33.33 | 33.12 |
| GSMUA_Achr3P05530_001 | Banana | mitochondrion | 31.37 | 32.21 |
| GSMUA_Achr9P14000_001 | Banana | mitochondrion | 32.03 | 31.21 |
| GSMUA_Achr7P19700_001 | Banana | mitochondrion | 30.07 | 30.87 |
| GSMUA_Achr5P24140_001 | Banana | extracellular, plastid | 30.72 | 30.72 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P05740_001 | EnsemblPlants:GSMUA_Achr4T05740_001 | EnsemblPlantsGene:GSMUA_Achr4G05740_001 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 |
| InterPro:SAUR_fam | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF59 | PFAM:PF02519 | SEG:seg | UniParc:UPI00029503C9 |
| UniProt:M0SLE1 | MapMan:35.2 | : | : | : | : |
Description
Auxin-induced protein 6B [Source:GMGC_GENE;Acc:GSMUA_Achr4G05740_001]
Coordinates
chr4:-:4436087..4436548
Molecular Weight (calculated)
17128.9 Da
IEP (calculated)
9.760
GRAVY (calculated)
-0.347
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MESKKANKIT EIVRLQQMLR KWKKLAVTPK SSSKSMKFLK RTLSFSDGAS TTSSSSSGDV PKGYLAVCVG EEMRRFVIPT EYLGHRAFAA LLREAEEEFG
101: FQQEGVLRIP CEVAAFESTL RVVEKKKKKE GFCYCSAEAE LACSHLPPKP VCR
101: FQQEGVLRIP CEVAAFESTL RVVEKKKKKE GFCYCSAEAE LACSHLPPKP VCR
001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
Arabidopsis Description
At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.