Factsheet for GSMUA_Achr9P19570_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P23000_001
GSMUA_Achr5P26360_001
GSMUA_Achr7P27110_001
GSMUA_Achr8P01460_001
GSMUA_Achr9P30020_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24400.1	GSMUA_Achr3P23000_001	AT4G27280.1	21798944
AT2G24400.1	GSMUA_Achr5P26360_001	AT4G27280.1	21798944
AT2G24400.1	GSMUA_Achr7P27110_001	AT4G27280.1	21798944
AT2G24400.1	GSMUA_Achr8P01460_001	AT4G27280.1	21798944
AT2G24400.1	GSMUA_Achr9P30020_001	AT4G27280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P10530_001	Banana	cytosol	72.13	70.4
GSMUA_Achr4P12510_001	Banana	cytosol	37.7	56.79
GSMUA_Achr4P05740_001	Banana	cytosol, plastid	66.39	52.94
GSMUA_Achr6P03720_001	Banana	cytosol	63.11	51.33
KRH46980	Soybean	cytosol	59.02	50.7
GSMUA_Achr5P24150_001	Banana	mitochondrion	46.72	47.5
KRH44681	Soybean	plastid	59.02	46.45
VIT_04s0008g02800.t01	Wine grape	plastid	59.84	45.06
KRH52631	Soybean	plastid	61.48	43.86
VIT_09s0054g00660.t01	Wine grape	cytosol, plastid	61.48	43.35
VIT_09s0054g00740.t01	Wine grape	cytosol, plastid	62.3	42.94
AT2G24400.1	Thale cress	cytosol, mitochondrion, nucleus	62.3	42.7
KRH16185	Soybean	nucleus	61.48	42.37
KRH04818	Soybean	cytosol	59.02	41.62
KRH61972	Soybean	plastid	58.2	41.52
CDY46148	Canola	cytosol, mitochondrion, nucleus	59.02	40.91
Bra032097.1-P	Field mustard	cytosol, mitochondrion, nucleus	59.02	40.68
CDY20311	Canola	cytosol, mitochondrion, nucleus	58.2	40.57
AT4G31320.1	Thale cress	cytosol	60.66	39.15
CDY36449	Canola	cytosol, nucleus, plastid	56.56	37.91
CDY13423	Canola	nucleus	53.28	36.52
CDY28255	Canola	nucleus	55.74	36.17
CDX68733	Canola	nucleus	55.74	36.17
Bra011258.1-P	Field mustard	nucleus	55.74	36.17
Bra024013.1-P	Field mustard	nucleus	55.74	35.79
PGSC0003DMT400023703	Potato	nucleus	50.82	35.43
Solyc03g124020.1.1	Tomato	nucleus	51.64	33.51
CDX72302	Canola	nucleus	55.74	32.54
GSMUA_Achr7P19840_001	Banana	cytosol	39.34	31.17
GSMUA_Achr6P31030_001	Banana	cytosol, mitochondrion	36.89	29.22
GSMUA_Achr5P22090_001	Banana	cytosol	35.25	27.92
GSMUA_Achr3P05530_001	Banana	mitochondrion	31.97	26.17
GSMUA_Achr5P24140_001	Banana	extracellular, plastid	31.97	25.49
GSMUA_Achr9P14000_001	Banana	mitochondrion	31.15	24.2
GSMUA_Achr7P19700_001	Banana	mitochondrion	28.69	23.49

Protein Annotations

EnsemblPlants:GSMUA_Achr9P19570_001	EnsemblPlants:GSMUA_Achr9T19570_001	EnsemblPlantsGene:GSMUA_Achr9G19570_001	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF59	PFAM:PF02519	SEG:seg	UniParc:UPI0002969FB5
UniProt:M0U1R4	MapMan:35.2	:	:	:	:

Description

Putative Auxin-induced protein X10A [Source:GMGC_GENE;Acc:GSMUA_Achr9G19570_001]

Coordinates

chr9:-:21606728..21607096

Molecular Weight (calculated)

13882.2 Da

IEP (calculated)

8.978

GRAVY (calculated)

-0.028

Length

122 amino acids

Sequence
(BLAST)

001: MDSKKLSKIT ELVSYQQMLK KWKKLAVAGD GSSKSIRFLK RALSLSGYIP KGCFVVCVGQ EMQRFVIPTE CLSHTAFAVL LREAEEEYGF EQEGVLRIPC
101: EVSVFRSILK MVEKTKEGIY YC

Best Arabidopsis Sequence Match ( AT2G24400.1 )
(BLAST)

001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR

Arabidopsis Description

At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.